Variant report

Variant	rs61509669
Chromosome Location	chr3:99101608-99101609
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10935784	0.90[AFR][1000 genomes]
rs11914571	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11915304	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11918189	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11920092	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12636295	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12637345	0.91[ASN][1000 genomes]
rs13071410	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13075415	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13076783	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13080632	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16841136	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1994037	0.91[ASN][1000 genomes]
rs2464143	0.80[EUR][1000 genomes]
rs2670327	0.80[EUR][1000 genomes]
rs2670334	0.80[EUR][1000 genomes]
rs2700660	0.80[EUR][1000 genomes]
rs34036931	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34842877	0.80[EUR][1000 genomes]
rs35236325	0.80[EUR][1000 genomes]
rs35422279	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4339135	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4422347	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4580592	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4616686	0.80[EUR][1000 genomes]
rs58712684	0.83[EUR][1000 genomes]
rs60898392	0.86[ASN][1000 genomes]
rs66702522	0.87[AFR][1000 genomes]
rs67428089	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71313539	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72938326	0.84[ASN][1000 genomes]
rs72940106	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7628820	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9823862	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv877216	chr3:99065296-99161022	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99092600-99112600	Weak transcription	NHLF	lung
2	chr3:99098000-99102800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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