Variant report

Variant	rs4339135
Chromosome Location	chr3:99128882-99128883
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11914571	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11915304	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11918189	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11920092	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12636295	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12637345	0.93[ASN][1000 genomes]
rs13071410	0.93[ASN][1000 genomes]
rs13075415	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13076783	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13080632	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13089029	0.89[EUR][1000 genomes]
rs16841136	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1994037	0.93[ASN][1000 genomes]
rs2464143	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2670327	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2670334	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2700660	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34036931	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34842877	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35069145	0.89[EUR][1000 genomes]
rs35236325	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35422279	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4422347	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4580592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4616686	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58712684	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60898392	0.88[ASN][1000 genomes]
rs61509669	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67428089	0.93[ASN][1000 genomes]
rs6765840	1.00[TSI][hapmap]
rs71313539	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72938326	0.82[ASN][1000 genomes]
rs72940106	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7628820	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9823862	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv877216	chr3:99065296-99161022	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99118400-99130000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:99118600-99132800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:99126800-99129000	Weak transcription	NHLF	lung
4	chr3:99128400-99133400	Enhancers	NHDF-Ad	bronchial
5	chr3:99128800-99129800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:99128800-99130200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:99128800-99132800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:99128800-99133800	Enhancers	Muscle Satellite Cultured Cells	--

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