Variant report

Variant	rs35239561
Chromosome Location	chr7:117375432-117375433
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117373911..117375838-chr7:117379678..117382405,2	MCF-7	breast:
2	chr7:117370526..117372524-chr7:117372686..117375672,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs34013793	1.00[AMR][1000 genomes]
rs34114986	1.00[AMR][1000 genomes]
rs34179723	1.00[AMR][1000 genomes]
rs34412203	1.00[AMR][1000 genomes]
rs34732112	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35168569	1.00[AMR][1000 genomes]
rs35541900	1.00[AMR][1000 genomes]
rs35560931	1.00[AMR][1000 genomes]
rs35917213	1.00[AMR][1000 genomes]
rs6957672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464695	chr7:117342771-117393516	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv608258	chr7:117342771-117393516	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117327000-117376400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:117349600-117385000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:117353200-117384600	Weak transcription	Ovary	ovary
4	chr7:117354800-117417200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:117355000-117382800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr7:117356200-117431400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr7:117356800-117376000	Weak transcription	NH-A	brain
8	chr7:117358400-117398800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:117359200-117402600	Weak transcription	Spleen	Spleen
10	chr7:117362600-117394000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr7:117363200-117401000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr7:117364200-117376600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr7:117365400-117380800	Weak transcription	Fetal Brain Male	brain
14	chr7:117365600-117407000	Weak transcription	Colon Smooth Muscle	Colon
15	chr7:117367000-117376200	Weak transcription	Gastric	stomach
16	chr7:117369600-117384000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:117370400-117380000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr7:117371200-117377200	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr7:117371600-117376600	Weak transcription	Right Ventricle	heart
20	chr7:117371600-117381600	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr7:117371800-117396000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:117372000-117380200	Weak transcription	Fetal Intestine Large	intestine
23	chr7:117372000-117395800	Weak transcription	Fetal Intestine Small	intestine
24	chr7:117372600-117377000	Strong transcription	H1 Cell Line	embryonic stem cell
25	chr7:117373200-117375600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr7:117373200-117377000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr7:117373200-117379400	Strong transcription	Fetal Lung	lung
28	chr7:117374200-117375800	Strong transcription	Fetal Kidney	kidney
29	chr7:117374200-117376200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr7:117374200-117378600	Weak transcription	Lung	lung
31	chr7:117374400-117393800	Weak transcription	Fetal Heart	heart
32	chr7:117374600-117380800	Weak transcription	Stomach Smooth Muscle	stomach
33	chr7:117374800-117384800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr7:117375000-117410800	Weak transcription	Left Ventricle	heart
35	chr7:117375200-117376200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr7:117375200-117377000	Weak transcription	Brain Hippocampus Middle	brain
37	chr7:117375200-117377200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr7:117375200-117377400	Weak transcription	Fetal Stomach	stomach
39	chr7:117375200-117378000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr7:117375200-117378200	Weak transcription	Brain Germinal Matrix	brain
41	chr7:117375200-117378200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr7:117375200-117378400	Weak transcription	Brain Anterior Caudate	brain
43	chr7:117375200-117378600	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr7:117375200-117380400	Weak transcription	NHLF	lung
45	chr7:117375200-117380600	Weak transcription	Adipose Nuclei	Adipose
46	chr7:117375200-117380800	Weak transcription	Aorta	Aorta
47	chr7:117375200-117382000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr7:117375200-117395800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr7:117375200-117395800	Weak transcription	Pancreas	Pancrea
50	chr7:117375200-117431600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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