Variant report

Variant	rs34114986
Chromosome Location	chr7:117227641-117227642
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr7:117227542-117228031	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000234001	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs34013793	1.00[AMR][1000 genomes]
rs34179723	1.00[AMR][1000 genomes]
rs34412203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34732112	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35239561	1.00[AMR][1000 genomes]
rs35541900	1.00[AMR][1000 genomes]
rs35917213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6957672	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889077	chr7:117129404-117238379	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv889078	chr7:117135025-117246315	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv889080	chr7:117176248-117238379	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv889081	chr7:117203417-117238379	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv889082	chr7:117203417-117246315	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv889083	chr7:117203417-117256374	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv889084	chr7:117212723-117246315	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv889085	chr7:117214089-117246315	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv889086	chr7:117214089-117252873	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv889087	chr7:117226766-117246315	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117208600-117232400	Weak transcription	Pancreas	Pancrea
2	chr7:117214000-117228000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr7:117214400-117228000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr7:117216800-117235600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr7:117218400-117228000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr7:117223000-117227800	Weak transcription	Liver	Liver
7	chr7:117223000-117228600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:117223200-117227800	Weak transcription	NHLF	lung
9	chr7:117223800-117228800	Enhancers	Dnd41	blood
10	chr7:117224600-117228000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:117225800-117228800	Enhancers	Fetal Thymus	thymus
12	chr7:117225800-117229000	Enhancers	Fetal Intestine Large	intestine
13	chr7:117226000-117230600	Enhancers	Hela-S3	cervix
14	chr7:117226200-117231000	Enhancers	Fetal Intestine Small	intestine
15	chr7:117227000-117227800	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr7:117227000-117232000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr7:117227200-117228600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr7:117227400-117228400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr7:117227400-117228400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr7:117227600-117228600	Enhancers	A549	lung

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