Variant report

Variant	rs35541900
Chromosome Location	chr7:117142924-117142925
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs34013793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34114986	1.00[AMR][1000 genomes]
rs34179723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34412203	1.00[AMR][1000 genomes]
rs34732112	1.00[AMR][1000 genomes]
rs35239561	1.00[AMR][1000 genomes]
rs35917213	1.00[AMR][1000 genomes]
rs6957672	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889076	chr7:117064625-117147547	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv889077	chr7:117129404-117238379	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv889078	chr7:117135025-117246315	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117126800-117151200	Weak transcription	Pancreas	Pancrea
2	chr7:117129800-117144600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr7:117141800-117143200	Enhancers	Small Intestine	intestine
4	chr7:117142000-117143200	Enhancers	Fetal Intestine Small	intestine
5	chr7:117142000-117143200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr7:117142000-117143200	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr7:117142400-117147000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr7:117142800-117145200	Weak transcription	Fetal Intestine Large	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links