Variant report

Variant	rs35251287
Chromosome Location	chr6:71556032-71556033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71553972..71556395-chr6:71557916..71560917,3	MCF-7	breast:

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs1024211	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10428835	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10455229	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10455707	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10455708	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10498874	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10498875	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10498876	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10738047	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10755541	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10755543	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10806635	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10806636	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1084381	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1084384	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1084387	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1084388	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1084389	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1084390	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10945239	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10945243	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10945244	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10945245	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10945246	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10945247	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10945248	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10945254	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10945261	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10945262	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10945263	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12190987	0.86[ASN][1000 genomes]
rs12191175	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12191208	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12195774	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12197239	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12202843	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12204418	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12207501	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12208797	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12209357	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12209431	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12211207	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12212629	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12215187	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12215467	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12215757	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12215835	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12215915	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13207111	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1333964	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1333967	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1541127	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1577109	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1577110	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17694765	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2249159	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2347431	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2347432	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2347433	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2460687	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2460689	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2474912	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2474913	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2474917	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2504756	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2504757	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28488598	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4282370	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4404740	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4410689	0.87[AMR][1000 genomes]
rs4580826	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4613778	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4616957	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4706461	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4706462	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4706463	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4706464	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4707847	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4707851	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4707855	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4707856	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4707857	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61051169	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62419706	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6455380	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7760267	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7771674	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7775813	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs781963	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs781964	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs781965	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs781966	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs781967	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs781968	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs781969	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs781971	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs781974	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs781975	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs781977	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs781978	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs781979	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs781981	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs781982	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs781983	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs781984	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs781985	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs781987	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs781989	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs781990	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs781991	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs781992	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs782002	0.84[EUR][1000 genomes]
rs9455215	0.92[ASN][1000 genomes]
rs9455220	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71474600-71568800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:71492400-71563600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:71506800-71570600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr6:71516400-71562200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:71516400-71567600	Weak transcription	Pancreas	Pancrea
6	chr6:71516600-71567600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:71522000-71558200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:71531200-71571000	Weak transcription	Stomach Mucosa	stomach
9	chr6:71532400-71557200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:71533000-71567600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:71533200-71557000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr6:71534000-71563200	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:71534800-71567600	Weak transcription	Aorta	Aorta
14	chr6:71537600-71574200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:71543800-71562200	Weak transcription	Fetal Thymus	thymus
16	chr6:71544400-71562200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr6:71544400-71562200	Weak transcription	Adipose Nuclei	Adipose
18	chr6:71544400-71567200	Weak transcription	Brain Hippocampus Middle	brain
19	chr6:71544400-71568800	Weak transcription	HSMMtube	muscle
20	chr6:71544400-71569800	Weak transcription	Placenta	Placenta
21	chr6:71544600-71566600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:71545400-71566200	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr6:71545400-71572200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr6:71546000-71557400	Weak transcription	Lung	lung
25	chr6:71546200-71567000	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr6:71547000-71562200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr6:71547200-71567000	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr6:71547200-71567600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr6:71547800-71567200	Weak transcription	Rectal Smooth Muscle	rectum
30	chr6:71548600-71567600	Weak transcription	Left Ventricle	heart
31	chr6:71549000-71567400	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr6:71549200-71567200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr6:71549200-71570000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:71549400-71558200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr6:71549800-71557200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr6:71549800-71568800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr6:71549800-71573000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:71550000-71575400	Weak transcription	Ovary	ovary
39	chr6:71550200-71562200	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr6:71550600-71573000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr6:71551000-71571400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr6:71551200-71568600	Weak transcription	Brain Cingulate Gyrus	brain
43	chr6:71551200-71570200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr6:71551200-71570400	Weak transcription	Fetal Brain Female	brain
45	chr6:71552200-71558600	Weak transcription	Primary B cells from cord blood	blood
46	chr6:71552400-71574200	Weak transcription	HSMM	muscle
47	chr6:71552800-71562200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr6:71553600-71556200	Weak transcription	Liver	Liver
49	chr6:71553600-71556200	Weak transcription	Gastric	stomach
50	chr6:71553600-71563400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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