Variant report

Variant	rs35292081
Chromosome Location	chr6:161415630-161415631
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:161415612-161415662	HNPCEpiC	eye:	n/a
2	chr6:161415612-161415662	HUVEC	blood vessel:	n/a
3	chr6:161415612-161415662	HL-60	blood:	n/a
4	chr6:161415612-161415662	RPTEC	kidney:	n/a
5	chr6:161415612-161415662	LNCaP	prostate:	n/a
6	chr6:161415612-161415662	SK-N-MC	brain:	n/a
7	chr6:161415612-161415662	ECC-1	luminal epithelium:	n/a
8	chr6:161415612-161415662	GM12891	blood:	n/a
9	chr6:161415612-161415662	SKMC	muscle:	n/a
10	chr6:161415612-161415662	NH-A	brain:	n/a
11	chr6:161415612-161415662	AG10803	skin:	n/a
12	chr6:161415612-161415662	BE2_C	brain:	n/a
13	chr6:161415612-161415662	HepG2	liver:	n/a
14	chr6:161415612-161415662	HRE	kidney:	n/a
15	chr6:161415612-161415662	AG04450	lung:	fetal
16	chr6:161415612-161415662	PFSK-1	brain:	n/a
17	chr6:161415612-161415662	Hepatocyte	liver:	n/a
18	chr6:161415612-161415662	HPAEpiC	pulmonary alveolar:	n/a
19	chr6:161415612-161415662	HIPEpiC	eye:	n/a
20	chr6:161415612-161415662	NHDF-neo	bronchial:	n/a
21	chr6:161415612-161415662	HAEpiC	amniotic membrane:	n/a
22	chr6:161415612-161415662	SAEC	small airway:	n/a
23	chr6:161415612-161415662	MCF10A-Er-Src	breast:	n/a
24	chr6:161415612-161415662	HRCEpiC	kidney:	n/a
25	chr6:161415612-161415662	H1-hESC	embryonic stem cell:	embryo
26	chr6:161415612-161415662	HCM	heart:	n/a
27	chr6:161415612-161415662	Hela-S3	cervix:	n/a
28	chr6:161415612-161415662	AG09319	gingival:	n/a
29	chr6:161415612-161415662	IMR90	lung:	fetal
30	chr6:161415612-161415662	HRPEpiC	eye:	n/a
31	chr6:161415612-161415662	MCF-7	breast:	n/a
32	chr6:161415612-161415662	Caco-2	colon:	n/a
33	chr6:161415612-161415662	HCT-116	colon:	n/a
34	chr6:161415612-161415662	GM06990	blood:	n/a
35	chr6:161415612-161415662	SK-N-SH	brain:	n/a
36	chr6:161415612-161415662	AG09309	skin:	n/a
37	chr6:161415612-161415662	NHBE	bronchial:	n/a
38	chr6:161415612-161415662	Jurkat	blood:	n/a
39	chr6:161415612-161415662	A549	lung:	n/a
40	chr6:161415612-161415662	ovcar-3	ovarian:	n/a
41	chr6:161415612-161415662	HEEpiC	esophagus:	n/a
42	chr6:161415612-161415662	ProgFib	skin:	n/a
43	chr6:161415612-161415662	AG04449	skin:	fetal
44	chr6:161415612-161415662	BJ	skin:	n/a
45	chr6:161415612-161415662	NB4	blood:	n/a
46	chr6:161415612-161415662	T-47D	breast:	n/a
47	chr6:161415612-161415662	GM19239	blood:	n/a
48	chr6:161415612-161415662	SK-N-SH_RA	brain:	n/a
49	chr6:161415612-161415662	GM12878	blood:	n/a
50	chr6:161415612-161415662	PANC-1	pancreas:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:161413545..161416445-chr6:161589800..161592180,2	K562	blood:
2	chr6:161414058..161416452-chr6:161484999..161486533,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000272841	CpG island

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13204034	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13206940	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13207108	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2468	1.00[ASN][1000 genomes]
rs28385633	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3798906	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56026056	0.82[AFR][1000 genomes]
rs6913706	0.85[AFR][1000 genomes]
rs6925141	1.00[ASN][1000 genomes]
rs71565784	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71565785	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73784705	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73784727	0.82[AFR][1000 genomes]
rs73784729	0.81[AFR][1000 genomes]
rs73784731	0.81[AFR][1000 genomes]
rs73784732	0.81[AFR][1000 genomes]
rs73784747	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161411800-161417800	Active TSS	GM12878-XiMat	blood
2	chr6:161413600-161416400	Weak transcription	Spleen	Spleen
3	chr6:161413800-161416400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:161413800-161416400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:161413800-161416400	Weak transcription	Esophagus	oesophagus
6	chr6:161413800-161416400	Weak transcription	Gastric	stomach
7	chr6:161413800-161416400	Weak transcription	Lung	lung
8	chr6:161413800-161416400	Weak transcription	Pancreas	Pancrea
9	chr6:161413800-161416400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:161413800-161416400	Weak transcription	Small Intestine	intestine
11	chr6:161413800-161432000	Weak transcription	Aorta	Aorta
12	chr6:161413800-161433000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:161414000-161415800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr6:161414000-161416000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr6:161414000-161416400	Weak transcription	Fetal Thymus	thymus
16	chr6:161414000-161416400	Weak transcription	Left Ventricle	heart
17	chr6:161414000-161416800	Weak transcription	Right Atrium	heart
18	chr6:161414000-161417200	Weak transcription	Brain Substantia Nigra	brain
19	chr6:161414000-161422400	Weak transcription	Fetal Muscle Leg	muscle
20	chr6:161414000-161430800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:161414000-161432000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:161414200-161415800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:161414200-161416200	Weak transcription	Fetal Intestine Large	intestine
24	chr6:161414200-161416200	Weak transcription	NHEK	skin
25	chr6:161414200-161416400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:161414200-161416400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:161414200-161416400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr6:161414200-161416400	Weak transcription	Fetal Intestine Small	intestine
29	chr6:161414200-161416400	Weak transcription	Right Ventricle	heart
30	chr6:161414200-161416400	Weak transcription	HSMMtube	muscle
31	chr6:161414200-161416600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr6:161414200-161416600	Weak transcription	HUVEC	blood vessel
33	chr6:161414200-161416800	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr6:161414200-161416800	Weak transcription	Stomach Smooth Muscle	stomach
35	chr6:161414200-161416800	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr6:161414200-161416800	Weak transcription	NHLF	lung
37	chr6:161414200-161417000	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr6:161414200-161417000	Weak transcription	Brain Angular Gyrus	brain
39	chr6:161414200-161417200	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr6:161414200-161417200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:161414200-161417400	Weak transcription	Fetal Brain Female	brain
42	chr6:161414200-161417600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr6:161414200-161417800	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr6:161414200-161418000	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr6:161414200-161418000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
46	chr6:161414200-161419000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr6:161414200-161420400	Weak transcription	Thymus	Thymus
48	chr6:161414200-161421400	Weak transcription	Brain Anterior Caudate	brain
49	chr6:161414200-161422400	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr6:161414200-161422400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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