Variant report

Variant	rs73784727
Chromosome Location	chr6:161473540-161473541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:161467892..161471897-chr6:161472211..161475123,4	K562	blood:
2	chr6:161473331..161474860-chr6:161484363..161486590,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs35292081	0.82[AFR][1000 genomes]
rs56026056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6913706	0.90[AFR][1000 genomes]
rs73784729	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784731	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784732	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784747	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784752	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784789	1.00[AMR][1000 genomes]
rs73784790	1.00[AMR][1000 genomes]
rs7754196	0.83[AMR][1000 genomes]
rs7772379	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161416600-161475200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:161435000-161490400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:161443800-161478600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:161449000-161494400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr6:161452800-161489400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:161453600-161506600	Weak transcription	Small Intestine	intestine
7	chr6:161455200-161495800	Weak transcription	Fetal Brain Male	brain
8	chr6:161456400-161501600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:161456800-161477000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:161456800-161485800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:161459400-161488800	Weak transcription	Brain Angular Gyrus	brain
12	chr6:161459400-161508800	Weak transcription	Hela-S3	cervix
13	chr6:161459800-161496600	Weak transcription	Fetal Kidney	kidney
14	chr6:161459800-161502800	Weak transcription	HUVEC	blood vessel
15	chr6:161460000-161499200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr6:161460400-161487200	Weak transcription	Colon Smooth Muscle	Colon
17	chr6:161460400-161488800	Weak transcription	Fetal Heart	heart
18	chr6:161460600-161495600	Weak transcription	HSMMtube	muscle
19	chr6:161462000-161478400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:161462800-161474200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:161462800-161477400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr6:161462800-161478400	Weak transcription	Esophagus	oesophagus
23	chr6:161462800-161485800	Weak transcription	Aorta	Aorta
24	chr6:161462800-161497200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr6:161462800-161497800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:161462800-161508200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:161463000-161489000	Weak transcription	Fetal Brain Female	brain
28	chr6:161463000-161491600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr6:161463200-161488000	Weak transcription	Ovary	ovary
30	chr6:161463400-161491600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr6:161463600-161495600	Weak transcription	Pancreas	Pancrea
32	chr6:161463800-161499200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:161465400-161478200	Weak transcription	NHEK	skin
34	chr6:161468400-161474200	Strong transcription	K562	blood
35	chr6:161468600-161473800	Strong transcription	HepG2	liver
36	chr6:161469200-161474400	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr6:161469600-161476200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:161469800-161473600	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr6:161469800-161475000	Strong transcription	Primary B cells from cord blood	blood
40	chr6:161470000-161475200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:161470400-161478400	Weak transcription	HMEC	breast
42	chr6:161470400-161495000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr6:161470600-161488800	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr6:161470600-161492000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:161470600-161493800	Weak transcription	Fetal Thymus	thymus
46	chr6:161470600-161508000	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr6:161470800-161478600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:161470800-161484400	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr6:161470800-161485800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr6:161470800-161485800	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links