Variant report

Variant	rs73784747
Chromosome Location	chr6:161499170-161499171
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161496988..161499514-chr6:161501999..161503935,2	K562	blood:
2	chr6:161498068..161500201-chr6:161502387..161505321,2	K562	blood:
3	chr6:161497804..161499957-chr6:161534072..161535875,2	K562	blood:
4	chr6:161493297..161495719-chr6:161498983..161501000,2	K562	blood:

Variant related genes	Relation type
ENSG00000085511	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs35292081	0.80[AFR][1000 genomes]
rs56026056	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6913706	0.88[AFR][1000 genomes]
rs73784727	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784729	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784731	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784732	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784752	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784789	1.00[AMR][1000 genomes]
rs73784790	1.00[AMR][1000 genomes]
rs7754196	0.83[AMR][1000 genomes]
rs7772379	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1030852	chr6:161477750-161589394	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161453600-161506600	Weak transcription	Small Intestine	intestine
2	chr6:161456400-161501600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:161459400-161508800	Weak transcription	Hela-S3	cervix
4	chr6:161459800-161502800	Weak transcription	HUVEC	blood vessel
5	chr6:161460000-161499200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:161462800-161508200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:161463800-161499200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:161470600-161508000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:161471000-161503800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:161471400-161500600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:161478400-161501400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:161480200-161500800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:161482800-161499200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:161486200-161499200	Weak transcription	Gastric	stomach
15	chr6:161486200-161499200	Weak transcription	Spleen	Spleen
16	chr6:161486200-161519200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:161487800-161501000	Weak transcription	NHEK	skin
18	chr6:161488000-161499200	Weak transcription	Colon Smooth Muscle	Colon
19	chr6:161488000-161501800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:161488200-161501600	Weak transcription	NHDF-Ad	bronchial
21	chr6:161489400-161501400	Weak transcription	Brain Anterior Caudate	brain
22	chr6:161489800-161502600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:161490000-161508000	Weak transcription	Fetal Heart	heart
24	chr6:161490800-161501800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr6:161490800-161501800	Weak transcription	Right Ventricle	heart
26	chr6:161490800-161508000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:161491000-161538400	Strong transcription	Primary B cells from peripheral blood	blood
28	chr6:161491200-161508400	Weak transcription	Stomach Mucosa	stomach
29	chr6:161491600-161500000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:161491600-161516400	Strong transcription	Placenta	Placenta
31	chr6:161491600-161525400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr6:161491600-161528800	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr6:161491600-161529000	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr6:161491600-161539800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr6:161492200-161513800	Strong transcription	Fetal Intestine Large	intestine
36	chr6:161493000-161500600	Weak transcription	Colonic Mucosa	Colon
37	chr6:161493600-161502600	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr6:161493800-161503800	Weak transcription	A549	lung
39	chr6:161493800-161521400	Strong transcription	Fetal Thymus	thymus
40	chr6:161494000-161505600	Strong transcription	GM12878-XiMat	blood
41	chr6:161494400-161509000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr6:161494400-161512600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr6:161494400-161513400	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr6:161494400-161515400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr6:161494400-161525600	Strong transcription	Dnd41	blood
46	chr6:161494400-161542400	Strong transcription	Duodenum Mucosa	Duodenum
47	chr6:161494800-161513800	Strong transcription	Fetal Brain Female	brain
48	chr6:161495000-161499800	Strong transcription	Esophagus	oesophagus
49	chr6:161495000-161500800	Weak transcription	HMEC	breast
50	chr6:161495000-161501200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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