Variant report

Variant	rs35358137
Chromosome Location	chr2:98502201-98502202
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:98501614..98503209-chr2:98521833..98524518,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000075568	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17489259	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34516173	0.81[AMR][1000 genomes]
rs34635139	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35263587	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35589428	0.82[EUR][1000 genomes]
rs35760941	0.88[AMR][1000 genomes]
rs6755021	0.82[AMR][1000 genomes]
rs905484	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526360	chr2:98403683-98814054	Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv521568	chr2:98403683-98826203	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1004220	chr2:98423421-98816010	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1007259	chr2:98429744-98818080	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv535832	chr2:98429744-98818080	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1009218	chr2:98442640-98816010	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1003925	chr2:98442640-98821102	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv999442	chr2:98448732-98816010	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1013902	chr2:98454309-98818080	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv1013416	chr2:98472701-98688729	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98447800-98502800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:98478600-98502800	Weak transcription	Colonic Mucosa	Colon
3	chr2:98478600-98502800	Weak transcription	Pancreas	Pancrea
4	chr2:98487200-98502800	Weak transcription	Aorta	Aorta
5	chr2:98487400-98502400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr2:98487400-98502600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr2:98488200-98502600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr2:98488400-98502800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr2:98488400-98502800	Weak transcription	NHDF-Ad	bronchial
10	chr2:98488400-98502800	Weak transcription	NHLF	lung
11	chr2:98488600-98502400	Weak transcription	A549	lung
12	chr2:98489000-98502600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr2:98489000-98502800	Weak transcription	Ovary	ovary
14	chr2:98489200-98502600	Weak transcription	HMEC	breast
15	chr2:98489200-98502800	Weak transcription	Colon Smooth Muscle	Colon
16	chr2:98489200-98502800	Weak transcription	Psoas Muscle	Psoas
17	chr2:98489600-98502800	Weak transcription	Spleen	Spleen
18	chr2:98490000-98502800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr2:98490000-98502800	Weak transcription	Lung	lung
20	chr2:98490200-98502800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr2:98490200-98502800	Weak transcription	Fetal Stomach	stomach
22	chr2:98495800-98502800	Weak transcription	NHEK	skin
23	chr2:98496000-98502600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr2:98496200-98502800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr2:98496600-98502800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr2:98497200-98502400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr2:98497200-98502400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr2:98497200-98502800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr2:98497600-98502800	Weak transcription	Left Ventricle	heart
30	chr2:98497600-98502800	Weak transcription	Right Ventricle	heart
31	chr2:98498000-98502600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr2:98498200-98502800	Weak transcription	Fetal Thymus	thymus
33	chr2:98498200-98502800	Weak transcription	Thymus	Thymus
34	chr2:98500200-98502800	Weak transcription	Rectal Smooth Muscle	rectum
35	chr2:98500800-98502600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr2:98500800-98504000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr2:98500800-98505000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr2:98500800-98505000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr2:98500800-98505400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr2:98501000-98502800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr2:98501000-98503200	ZNF genes & repeats	Brain Hippocampus Middle	brain
42	chr2:98501000-98503400	ZNF genes & repeats	Fetal Brain Male	brain
43	chr2:98501000-98503600	ZNF genes & repeats	Fetal Kidney	kidney
44	chr2:98501000-98503800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
45	chr2:98501000-98503800	ZNF genes & repeats	HSMM	muscle
46	chr2:98501000-98504000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr2:98501000-98504000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr2:98501000-98504000	ZNF genes & repeats	Primary B cells from cord blood	blood
49	chr2:98501000-98504000	ZNF genes & repeats	Fetal Brain Female	brain
50	chr2:98501000-98504600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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