Variant report

Variant	rs35760941
Chromosome Location	chr2:98352304-98352305
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:98279581..98281603-chr2:98351078..98353477,2	K562	blood:
2	chr2:98340167..98342272-chr2:98350738..98353485,2	MCF-7	breast:
3	chr2:98351879..98353627-chr2:98354938..98356660,2	K562	blood:

Variant related genes	Relation type
ENSG00000228486	Chromatin interaction
ENSG00000201806	Chromatin interaction
ENSG00000115085	Chromatin interaction
ENSG00000115073	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17489259	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34250439	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34516173	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34635139	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35263587	0.91[AMR][1000 genomes]
rs35358137	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531382	chr2:98250628-98457616	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv874696	chr2:98309882-98362907	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35760941	FAHD2B	cis	Muscle Skeletal	GTEx

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98336400-98361400	Weak transcription	Primary B cells from cord blood	blood
2	chr2:98336600-98358800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr2:98337800-98357400	Strong transcription	Dnd41	blood
4	chr2:98338800-98358800	Strong transcription	Thymus	Thymus
5	chr2:98339600-98357200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr2:98341000-98354800	Weak transcription	Gastric	stomach
7	chr2:98342600-98357200	Strong transcription	Primary T cells from cord blood	blood
8	chr2:98343600-98357200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr2:98344800-98356400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr2:98344800-98356800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr2:98345000-98366400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr2:98346000-98357000	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr2:98347000-98360600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr2:98347200-98357400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr2:98347200-98358800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr2:98347800-98356200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr2:98348200-98372400	Weak transcription	Esophagus	oesophagus
18	chr2:98348600-98352800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr2:98348800-98355200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr2:98348800-98364600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr2:98349000-98356800	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr2:98349200-98356200	Strong transcription	Fetal Thymus	thymus
23	chr2:98349600-98353200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
24	chr2:98350000-98360400	Weak transcription	Fetal Intestine Small	intestine
25	chr2:98350200-98352400	Strong transcription	Primary T killer memory cells from peripheral blood	blood
26	chr2:98350800-98353200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr2:98351000-98352800	Weak transcription	Spleen	Spleen
28	chr2:98351000-98357000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr2:98351200-98353000	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr2:98351200-98353400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr2:98351600-98352800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr2:98351600-98357200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr2:98351800-98353800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr2:98352000-98353000	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr2:98352000-98354000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr2:98352200-98353800	Enhancers	Fetal Muscle Leg	muscle
37	chr2:98352200-98398800	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links