Variant report

Variant	rs35263587
Chromosome Location	chr2:98506906-98506907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:98505348..98508247-chr2:98519250..98521290,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10210520	0.80[AMR][1000 genomes]
rs12712120	0.80[AMR][1000 genomes]
rs17489259	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2121271	0.80[AMR][1000 genomes]
rs34190123	0.83[AMR][1000 genomes]
rs34250439	0.83[AMR][1000 genomes]
rs34414288	0.80[AMR][1000 genomes]
rs34516173	0.84[AMR][1000 genomes]
rs34635139	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35358137	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35589428	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35760941	0.91[AMR][1000 genomes]
rs55753459	0.83[AMR][1000 genomes]
rs6543088	0.80[AMR][1000 genomes]
rs6543111	0.80[AMR][1000 genomes]
rs6728312	0.80[AMR][1000 genomes]
rs6760008	0.80[AMR][1000 genomes]
rs6875	0.80[AMR][1000 genomes]
rs71429373	0.82[AMR][1000 genomes]
rs7570009	0.80[AMR][1000 genomes]
rs7582298	0.83[AMR][1000 genomes]
rs7593290	0.80[AMR][1000 genomes]
rs905484	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526360	chr2:98403683-98814054	Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv521568	chr2:98403683-98826203	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1004220	chr2:98423421-98816010	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1007259	chr2:98429744-98818080	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv535832	chr2:98429744-98818080	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1009218	chr2:98442640-98816010	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1003925	chr2:98442640-98821102	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv999442	chr2:98448732-98816010	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1013902	chr2:98454309-98818080	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv1013416	chr2:98472701-98688729	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98503600-98509000	Weak transcription	Small Intestine	intestine
2	chr2:98503600-98522800	Weak transcription	HUVEC	blood vessel
3	chr2:98503800-98508000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:98503800-98508200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:98503800-98508800	Weak transcription	Brain Substantia Nigra	brain
6	chr2:98503800-98509000	Weak transcription	Stomach Mucosa	stomach
7	chr2:98503800-98509800	Weak transcription	NH-A	brain
8	chr2:98503800-98516400	Weak transcription	HMEC	breast
9	chr2:98503800-98517200	Weak transcription	HSMM	muscle
10	chr2:98503800-98522600	Weak transcription	Fetal Kidney	kidney
11	chr2:98503800-98522800	Weak transcription	K562	blood
12	chr2:98503800-98524800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr2:98503800-98528600	Weak transcription	NHDF-Ad	bronchial
14	chr2:98503800-98536400	Weak transcription	HSMMtube	muscle
15	chr2:98504000-98507400	Weak transcription	Brain Anterior Caudate	brain
16	chr2:98504000-98507600	Weak transcription	Fetal Thymus	thymus
17	chr2:98504000-98507800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr2:98504000-98507800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr2:98504000-98507800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr2:98504000-98508400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr2:98504000-98508800	Weak transcription	Pancreas	Pancrea
22	chr2:98504000-98508800	Weak transcription	Right Ventricle	heart
23	chr2:98504000-98521800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr2:98504000-98521800	Weak transcription	Fetal Lung	lung
25	chr2:98504000-98522000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr2:98504000-98522200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr2:98504000-98522400	Weak transcription	Primary B cells from cord blood	blood
28	chr2:98504000-98522800	Weak transcription	Fetal Brain Female	brain
29	chr2:98504000-98523000	Weak transcription	Psoas Muscle	Psoas
30	chr2:98504000-98523600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr2:98504000-98528000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr2:98504000-98533800	Weak transcription	Spleen	Spleen
33	chr2:98504000-98538800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr2:98504000-98540600	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr2:98504000-98540800	Weak transcription	Rectal Smooth Muscle	rectum
36	chr2:98504200-98507000	Weak transcription	Colonic Mucosa	Colon
37	chr2:98504200-98507600	Weak transcription	NHEK	skin
38	chr2:98504200-98507800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr2:98504200-98508000	Weak transcription	Brain Angular Gyrus	brain
40	chr2:98504200-98508800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr2:98504200-98517600	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr2:98504200-98519200	Weak transcription	Gastric	stomach
43	chr2:98504200-98522200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr2:98504200-98522200	Weak transcription	Fetal Stomach	stomach
45	chr2:98504200-98522200	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr2:98504200-98522400	Weak transcription	Ovary	ovary
47	chr2:98504200-98522800	Weak transcription	Fetal Muscle Leg	muscle
48	chr2:98504200-98523000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr2:98504200-98523000	Weak transcription	Left Ventricle	heart
50	chr2:98504200-98525400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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