Variant report

Variant	rs35363564
Chromosome Location	chr5:35191506-35191507
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1610218	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34807259	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56221943	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59264910	0.84[AMR][1000 genomes]
rs6886978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7710537	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9687437	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3469107	chr5:35191036-35191580	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3506904	chr5:35191045-35191581	Weak transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3506902	chr5:35191047-35191551	Weak transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3506906	chr5:35191064-35191508	Weak transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3469104	chr5:35191070-35191546	Enhancers Genic enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3506903	chr5:35191083-35191528	Weak transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3506901	chr5:35191093-35191520	Weak transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3174	chr5:35191102-35191548	Weak transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3469105	chr5:35191103-35191561	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35180400-35193600	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr5:35182400-35193400	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr5:35184000-35197400	Weak transcription	Ovary	ovary
4	chr5:35186600-35192400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:35186800-35194400	Weak transcription	Fetal Kidney	kidney
6	chr5:35186800-35197600	Weak transcription	Gastric	stomach
7	chr5:35187000-35192400	Weak transcription	HepG2	liver
8	chr5:35187000-35194000	Weak transcription	Small Intestine	intestine
9	chr5:35188600-35192000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:35188600-35197600	Weak transcription	Liver	Liver
11	chr5:35188800-35193800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr5:35189200-35193200	Genic enhancers	Fetal Intestine Small	intestine
13	chr5:35189400-35193800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr5:35189400-35195200	Weak transcription	Pancreas	Pancrea
15	chr5:35189800-35191600	Weak transcription	Placenta	Placenta
16	chr5:35190400-35196400	Weak transcription	Stomach Mucosa	stomach
17	chr5:35190800-35192000	Enhancers	Fetal Intestine Large	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links