Variant report

No.	Distal block	Cell Line	Cell type
1	chr5:35182683..35185017-chr5:35186520..35189305,4	MCF-7	breast:
2	chr5:35186656..35188167-chr5:35229101..35231203,2	MCF-7	breast:
3	chr5:35187170..35189966-chr5:35191377..35193483,2	K562	blood:
4	chr5:35187009..35190222-chr5:35198444..35202663,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113494	Chromatin interaction

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1610218	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34807259	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35363564	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56221943	0.84[AMR][1000 genomes]
rs6869811	0.83[AFR][1000 genomes]
rs6886978	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9687437	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447271	chr5:35187099-35189623	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3340566	chr5:35187130-35189572	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2092288	chr5:35187154-35189573	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3507596	chr5:35187164-35189562	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3507597	chr5:35187164-35189562	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35180400-35193600	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr5:35182400-35193400	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr5:35182600-35188800	Enhancers	Rectal Mucosa Donor 29	rectum
4	chr5:35183000-35188200	Enhancers	Stomach Mucosa	stomach
5	chr5:35183800-35188000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:35183800-35188200	Weak transcription	Placenta	Placenta
7	chr5:35184000-35197400	Weak transcription	Ovary	ovary
8	chr5:35184600-35188200	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr5:35184600-35189400	Enhancers	Fetal Intestine Large	intestine
10	chr5:35185000-35188800	Enhancers	Duodenum Mucosa	Duodenum
11	chr5:35185800-35189400	Enhancers	Pancreas	Pancrea
12	chr5:35186000-35187600	Enhancers	Colonic Mucosa	Colon
13	chr5:35186400-35188000	Weak transcription	Liver	Liver
14	chr5:35186600-35188200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:35186600-35192400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr5:35186800-35194400	Weak transcription	Fetal Kidney	kidney
17	chr5:35186800-35197600	Weak transcription	Gastric	stomach
18	chr5:35187000-35192400	Weak transcription	HepG2	liver
19	chr5:35187000-35194000	Weak transcription	Small Intestine	intestine
20	chr5:35187200-35188200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr5:35187200-35189200	Enhancers	Fetal Intestine Small	intestine

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