Variant report

Variant	rs1610218
Chromosome Location	chr5:35186694-35186695
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35182683..35185017-chr5:35186520..35189305,4	MCF-7	breast:
2	chr5:35186656..35188167-chr5:35229101..35231203,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113494	Chromatin interaction

rs_ID	r²[population]
rs10059874	0.82[CEU][hapmap]
rs13361664	0.82[CEU][hapmap]
rs16872491	0.80[ASW][hapmap]
rs34807259	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35363564	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3822482	0.82[CEU][hapmap]
rs56221943	1.00[AMR][1000 genomes]
rs59264910	0.84[AMR][1000 genomes]
rs6451192	0.82[CEU][hapmap]
rs6883649	0.82[CEU][hapmap]
rs6886978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7710537	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7712482	0.82[CEU][hapmap]
rs7731880	0.82[CEU][hapmap]
rs7733450	0.82[CEU][hapmap]
rs9687437	1.00[CEU][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35180400-35193600	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr5:35182400-35193400	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr5:35182600-35188800	Enhancers	Rectal Mucosa Donor 29	rectum
4	chr5:35183000-35188200	Enhancers	Stomach Mucosa	stomach
5	chr5:35183800-35186800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:35183800-35187200	Weak transcription	Lung	lung
7	chr5:35183800-35188000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:35183800-35188200	Weak transcription	Placenta	Placenta
9	chr5:35184000-35197400	Weak transcription	Ovary	ovary
10	chr5:35184600-35188200	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr5:35184600-35189400	Enhancers	Fetal Intestine Large	intestine
12	chr5:35184800-35187000	Enhancers	HepG2	liver
13	chr5:35185000-35188800	Enhancers	Duodenum Mucosa	Duodenum
14	chr5:35185600-35187200	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr5:35185800-35186800	Enhancers	Fetal Kidney	kidney
16	chr5:35185800-35189400	Enhancers	Pancreas	Pancrea
17	chr5:35186000-35186800	Enhancers	Gastric	stomach
18	chr5:35186000-35187200	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr5:35186000-35187600	Enhancers	Colonic Mucosa	Colon
20	chr5:35186400-35187000	Enhancers	Small Intestine	intestine
21	chr5:35186400-35187200	Genic enhancers	Fetal Intestine Small	intestine
22	chr5:35186400-35188000	Weak transcription	Liver	Liver
23	chr5:35186600-35188200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr5:35186600-35192400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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