Variant report

Variant	rs10059874
Chromosome Location	chr5:35233786-35233787
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr5:35233723-35233798	H1-hESC	embryonic stem cell:	n/a	n/a
2	POU2F2	chr5:35233769-35234068	GM12891	blood:	n/a	chr5:35233905-35233918
3	YY1	chr5:35233738-35234116	H1-hESC	embryonic stem cell:	n/a	chr5:35233957-35233969
4	YY1	chr5:35233714-35234165	H1-hESC	embryonic stem cell:	n/a	chr5:35233957-35233969
5	POU2F2	chr5:35233710-35234124	GM12878	blood:	n/a	chr5:35233905-35233918

Variant related genes	Relation type
PRLR	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10074938	0.95[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs10941237	0.97[YRI][hapmap];0.95[AFR][1000 genomes]
rs12189146	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12653586	0.95[AFR][1000 genomes]
rs13163769	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13361664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610218	0.82[CEU][hapmap]
rs34404920	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35272298	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3822482	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6451191	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6451192	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6883649	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7712482	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7726240	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7731880	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs7733450	1.00[CEU][hapmap];0.83[CHB][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7733703	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7734321	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9687437	0.82[CEU][hapmap]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35230800-35233800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:35230800-35234800	Weak transcription	Pancreas	Pancrea
3	chr5:35230800-35237000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:35230800-35246000	Weak transcription	Gastric	stomach
5	chr5:35230800-35247200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:35231000-35237800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr5:35231000-35237800	Weak transcription	Stomach Mucosa	stomach
8	chr5:35231400-35237000	Weak transcription	Fetal Intestine Small	intestine
9	chr5:35231400-35237600	Weak transcription	Fetal Intestine Large	intestine
10	chr5:35232400-35234000	Enhancers	Placenta	Placenta

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