Variant report

Variant	rs6883649
Chromosome Location	chr5:35237786-35237787
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35235145..35237936-chr5:35268647..35271022,2	MCF-7	breast:
2	chr5:35228902..35231374-chr5:35237119..35239401,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113494	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10059874	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10472954	0.83[YRI][hapmap]
rs10941237	0.92[CHB][hapmap];0.80[ASN][1000 genomes]
rs12189146	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12653586	0.80[ASN][1000 genomes]
rs13163769	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13361664	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1610218	0.82[CEU][hapmap]
rs34404920	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35272298	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3822482	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6451191	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6451192	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7712482	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7726240	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7731880	1.00[CEU][hapmap]
rs7733450	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7733703	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7734321	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9687437	0.82[CEU][hapmap]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35230800-35246000	Weak transcription	Gastric	stomach
2	chr5:35230800-35247200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:35231000-35237800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr5:35231000-35237800	Weak transcription	Stomach Mucosa	stomach
5	chr5:35235800-35239200	Weak transcription	Pancreas	Pancrea
6	chr5:35237000-35238800	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr5:35237000-35239200	Enhancers	Fetal Intestine Small	intestine
8	chr5:35237600-35238000	Enhancers	HepG2	liver
9	chr5:35237600-35238600	Enhancers	Liver	Liver
10	chr5:35237600-35238600	Enhancers	Fetal Intestine Large	intestine
11	chr5:35237600-35238600	Enhancers	A549	lung

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