Variant report

Variant	rs7733450
Chromosome Location	chr5:35230152-35230153
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:35084839..35086462-chr5:35228012..35230894,2	MCF-7	breast:
2	chr17:57915126..57917390-chr5:35229183..35232122,2	MCF-7	breast:
3	chr5:35197281..35199094-chr5:35228644..35230168,2	MCF-7	breast:
4	chr5:35089474..35090431-chr5:35229944..35230527,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000062716	Chromatin interaction
ENSG00000113494	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10059874	1.00[CEU][hapmap];0.83[CHB][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12189146	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13163769	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13361664	1.00[CEU][hapmap];0.81[CHB][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1610218	0.82[CEU][hapmap]
rs34404920	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34455136	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs35272298	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36047773	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs36095564	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs3822482	1.00[CEU][hapmap];0.81[CHB][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6451191	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6451192	1.00[CEU][hapmap];0.81[CHB][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6883649	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7712482	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7713385	0.92[CHB][hapmap]
rs7726240	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7731880	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7732165	0.90[CHB][hapmap];0.89[ASN][1000 genomes]
rs7733703	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7734321	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7735260	0.91[CHB][hapmap];0.88[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs9687437	0.82[CEU][hapmap]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35229000-35230400	Active TSS	Placenta	Placenta
2	chr5:35229000-35231200	Active TSS	Ovary	ovary
3	chr5:35229200-35230600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:35229200-35230800	Active TSS	H1 Cell Line	embryonic stem cell
5	chr5:35229200-35230800	Active TSS	H9 Cell Line	embryonic stem cell
6	chr5:35229200-35231000	Active TSS	Fetal Kidney	kidney
7	chr5:35229400-35230200	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
8	chr5:35229400-35230400	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr5:35229400-35230400	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr5:35229400-35230400	Bivalent Enhancer	Primary hematopoietic stem cells	blood
11	chr5:35229400-35230400	Bivalent Enhancer	Fetal Brain Male	brain
12	chr5:35229400-35230400	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood
13	chr5:35229400-35230600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
14	chr5:35229400-35230600	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:35229400-35230600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
16	chr5:35229400-35230600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:35229400-35230800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr5:35229400-35230800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr5:35229400-35230800	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
20	chr5:35229400-35230800	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr5:35229400-35231000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
22	chr5:35229400-35231000	Bivalent Enhancer	Fetal Lung	lung
23	chr5:35229400-35231400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr5:35229600-35230200	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr5:35229600-35230200	Flanking Bivalent TSS/Enh	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr5:35229600-35230200	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
27	chr5:35229600-35230200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr5:35229600-35230200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
29	chr5:35229600-35230200	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
30	chr5:35229600-35230200	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
31	chr5:35229600-35230200	Flanking Bivalent TSS/Enh	A549	lung
32	chr5:35229600-35230400	Bivalent Enhancer	Fetal Heart	heart
33	chr5:35229600-35230400	Bivalent/Poised TSS	Thymus	Thymus
34	chr5:35229600-35230400	Active TSS	Monocytes-CD14+_RO01746	blood
35	chr5:35229600-35230600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
36	chr5:35229600-35230600	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr5:35229600-35230600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr5:35229600-35230600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
39	chr5:35229600-35230600	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr5:35229600-35230600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr5:35229600-35230600	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
42	chr5:35229600-35230600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
43	chr5:35229600-35230600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
44	chr5:35229600-35230600	Flanking Bivalent TSS/Enh	Left Ventricle	heart
45	chr5:35229600-35230600	Active TSS	Small Intestine	intestine
46	chr5:35229600-35230800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr5:35229600-35230800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr5:35229600-35230800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr5:35229600-35230800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr5:35229600-35230800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin

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