Variant report

Variant	rs35372343
Chromosome Location	chr5:107198124-107198125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10479411	0.81[AMR][1000 genomes]
rs11745018	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12656092	0.80[AMR][1000 genomes]
rs2195941	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3846696	0.80[EUR][1000 genomes]
rs3926991	0.81[AMR][1000 genomes]
rs62361076	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv599335	chr5:107196998-107199211	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107189000-107204000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:107189000-107212200	Weak transcription	Fetal Brain Male	brain
3	chr5:107194000-107219000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:107195200-107214800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr5:107195400-107204800	Weak transcription	Brain Anterior Caudate	brain
6	chr5:107195400-107205000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:107195400-107207600	Weak transcription	Spleen	Spleen
8	chr5:107195400-107208600	Weak transcription	Brain Hippocampus Middle	brain
9	chr5:107195400-107211600	Weak transcription	Aorta	Aorta
10	chr5:107195400-107214200	Weak transcription	Primary B cells from cord blood	blood
11	chr5:107195400-107215000	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr5:107195400-107215000	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr5:107195400-107217800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:107195400-107220000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr5:107195400-107223200	Weak transcription	Left Ventricle	heart
16	chr5:107195600-107204600	Weak transcription	Fetal Stomach	stomach
17	chr5:107195800-107214400	Weak transcription	Fetal Intestine Small	intestine
18	chr5:107195800-107218200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr5:107196000-107199200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr5:107196000-107204200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr5:107196000-107210800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr5:107196200-107199000	Weak transcription	Dnd41	blood
23	chr5:107196200-107200200	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr5:107196400-107200800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr5:107196400-107202600	Weak transcription	Placenta	Placenta
26	chr5:107196800-107198200	Strong transcription	Liver	Liver
27	chr5:107196800-107203400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr5:107196800-107205000	Weak transcription	HSMM	muscle
29	chr5:107196800-107223200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr5:107197000-107200800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr5:107197400-107198600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr5:107197600-107200200	Weak transcription	Pancreas	Pancrea
33	chr5:107197600-107204200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr5:107197600-107215400	Weak transcription	Ovary	ovary
35	chr5:107197800-107199400	Weak transcription	Right Ventricle	heart
36	chr5:107197800-107200200	Weak transcription	Esophagus	oesophagus
37	chr5:107197800-107200400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr5:107197800-107204800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr5:107197800-107210400	Weak transcription	Primary T cells from cord blood	blood
40	chr5:107197800-107215400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr5:107197800-107215800	Weak transcription	Lung	lung
42	chr5:107197800-107219000	Weak transcription	Gastric	stomach
43	chr5:107197800-107228800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr5:107198000-107199800	Weak transcription	Duodenum Mucosa	Duodenum
45	chr5:107198000-107223000	Weak transcription	Adipose Nuclei	Adipose

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