Variant report

Variant	rs12656092
Chromosome Location	chr5:107237147-107237148
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10076055	1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1036211	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11745018	1.00[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12514763	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12514780	0.95[CEU][hapmap];0.94[CHB][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12522338	0.83[CHB][hapmap]
rs1433054	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs2195941	1.00[CHB][hapmap];0.84[JPT][hapmap];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs35372343	0.80[AMR][1000 genomes]
rs62361076	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62361079	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72795963	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs892007	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs919767	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107216400-107240600	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107230400-107237200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:107236600-107237400	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr5:107236600-107237400	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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