Variant report

Variant	rs12514763
Chromosome Location	chr5:107254677-107254678
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10076055	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1036211	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12514780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12522338	0.82[ASN][1000 genomes]
rs12656092	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1433054	0.83[EUR][1000 genomes]
rs2195941	0.85[AMR][1000 genomes]
rs62361076	0.83[AMR][1000 genomes]
rs62361079	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72795963	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs892007	0.95[EUR][1000 genomes]
rs919767	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107248600-107258600	Weak transcription	Left Ventricle	heart
2	chr5:107251600-107261000	Weak transcription	Aorta	Aorta
3	chr5:107252600-107254800	Enhancers	Liver	Liver
4	chr5:107253200-107255000	Enhancers	NHDF-Ad	bronchial
5	chr5:107253200-107255400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:107253600-107254800	Enhancers	Osteobl	bone
7	chr5:107253800-107257000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr5:107254000-107255000	Weak transcription	Esophagus	oesophagus
9	chr5:107254000-107255200	Enhancers	Dnd41	blood
10	chr5:107254000-107258000	Weak transcription	Thymus	Thymus
11	chr5:107254000-107259000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr5:107254000-107262600	Weak transcription	Pancreas	Pancrea
13	chr5:107254200-107258200	Weak transcription	Primary T cells from cord blood	blood
14	chr5:107254400-107254800	Weak transcription	Fetal Brain Male	brain
15	chr5:107254600-107257400	Weak transcription	Fetal Thymus	thymus
16	chr5:107254600-107258400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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