Variant report

Variant	rs62361079
Chromosome Location	chr5:107250613-107250614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10076055	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1036211	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11745018	0.80[AMR][1000 genomes]
rs12514763	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12514780	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12522338	0.91[ASN][1000 genomes]
rs12656092	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1433054	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2195941	0.91[AMR][1000 genomes]
rs62361076	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs72795963	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs892007	0.96[EUR][1000 genomes]
rs919767	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107244600-107253000	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr5:107245600-107253200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:107248600-107258600	Weak transcription	Left Ventricle	heart
4	chr5:107249600-107251200	Weak transcription	Primary T cells from cord blood	blood
5	chr5:107250000-107250800	Enhancers	Fetal Brain Female	brain
6	chr5:107250200-107251400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:107250400-107251000	Weak transcription	Dnd41	blood
8	chr5:107250400-107253000	Weak transcription	Thymus	Thymus
9	chr5:107250400-107253600	Weak transcription	Fetal Thymus	thymus
10	chr5:107250400-107253600	Weak transcription	Pancreas	Pancrea
11	chr5:107250600-107251000	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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