Variant report

Variant	rs1433054
Chromosome Location	chr5:107261714-107261715
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10076055	0.82[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1036211	0.82[CEU][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12514763	0.83[EUR][1000 genomes]
rs12514780	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12522338	0.89[CHB][hapmap];0.87[JPT][hapmap];0.95[ASN][1000 genomes]
rs12656092	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs62361079	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72795963	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs892007	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs919767	0.82[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107254000-107262600	Weak transcription	Pancreas	Pancrea
2	chr5:107257400-107262000	Enhancers	Fetal Thymus	thymus
3	chr5:107258000-107261800	Enhancers	Thymus	Thymus
4	chr5:107258200-107262400	Enhancers	Primary T cells from cord blood	blood
5	chr5:107260600-107263000	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr5:107260800-107262400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr5:107261400-107262400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr5:107261400-107262400	Enhancers	Dnd41	blood
9	chr5:107261400-107286600	Weak transcription	Aorta	Aorta
10	chr5:107261600-107261800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr5:107261600-107262000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr5:107261600-107262000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr5:107261600-107262000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr5:107261600-107262400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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