Variant report

Variant	rs892007
Chromosome Location	chr5:107260244-107260245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10076055	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs1036211	1.00[CEU][hapmap];0.85[TSI][hapmap];0.97[EUR][1000 genomes]
rs12514763	0.95[EUR][1000 genomes]
rs12514780	0.96[CEU][hapmap];0.85[TSI][hapmap];0.95[EUR][1000 genomes]
rs12656092	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1433054	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs62361079	0.96[EUR][1000 genomes]
rs72795963	0.95[EUR][1000 genomes]
rs919767	1.00[CEU][hapmap];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs892007	FBXL17	cis	lymphoblastoid	seeQTL
rs892007	FBXL17	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107251600-107261000	Weak transcription	Aorta	Aorta
2	chr5:107254000-107262600	Weak transcription	Pancreas	Pancrea
3	chr5:107257400-107262000	Enhancers	Fetal Thymus	thymus
4	chr5:107257800-107261600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:107258000-107261800	Enhancers	Thymus	Thymus
6	chr5:107258200-107262400	Enhancers	Primary T cells from cord blood	blood
7	chr5:107258600-107260600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr5:107259600-107261000	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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