Variant report

Variant	rs62361076
Chromosome Location	chr5:107223098-107223099
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107223013..107225610-chr5:107226958..107229602,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1036211	0.86[AMR][1000 genomes]
rs11745018	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12514763	0.83[AMR][1000 genomes]
rs12514780	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12656092	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2195941	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35372343	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62361079	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs72795963	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs919767	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107195400-107223200	Weak transcription	Left Ventricle	heart
2	chr5:107196800-107223200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr5:107197800-107228800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr5:107205800-107230000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:107209400-107226000	Weak transcription	Psoas Muscle	Psoas
6	chr5:107212000-107228800	Weak transcription	Aorta	Aorta
7	chr5:107212400-107223200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:107213000-107223200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:107213200-107225000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:107213600-107223400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:107216400-107240600	Weak transcription	Primary B cells from cord blood	blood
12	chr5:107216600-107226200	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr5:107220600-107223200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr5:107221400-107223600	Enhancers	Thymus	Thymus
15	chr5:107221800-107223600	Enhancers	HUVEC	blood vessel
16	chr5:107221800-107229000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr5:107222000-107223200	Enhancers	Fetal Intestine Small	intestine
18	chr5:107222200-107223200	Enhancers	Fetal Intestine Large	intestine
19	chr5:107222200-107223800	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr5:107222600-107223200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr5:107222800-107223200	Active TSS	Rectal Mucosa Donor 31	rectum
22	chr5:107222800-107223400	Active TSS	Duodenum Mucosa	Duodenum
23	chr5:107222800-107223600	Flanking Active TSS	Primary T cells from cord blood	blood
24	chr5:107222800-107226000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:107223000-107223400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr5:107223000-107223400	Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr5:107223000-107223400	Enhancers	Fetal Lung	lung
28	chr5:107223000-107223600	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr5:107223000-107223600	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr5:107223000-107223600	Active TSS	Adipose Nuclei	Adipose
31	chr5:107223000-107223600	Active TSS	Ovary	ovary
32	chr5:107223000-107223800	Flanking Active TSS	GM12878-XiMat	blood
33	chr5:107223000-107224400	Enhancers	Fetal Thymus	thymus

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