Variant report

Variant	rs35381898
Chromosome Location	chr9:116663416-116663417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116658311..116661574-chr9:116662658..116666570,4	K562	blood:
2	chr9:116660624..116662280-chr9:116663059..116664956,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10120883	0.91[ASN][1000 genomes]
rs10817531	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10817535	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2065184	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2150014	0.81[ASN][1000 genomes]
rs4979294	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4979295	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4979298	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6478045	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6478046	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6478047	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7038501	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7855811	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	nsv415373	chr9:116663230-116663463	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116649800-116663800	Weak transcription	HSMMtube	muscle
2	chr9:116649800-116668600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:116651000-116668000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:116651200-116675000	Weak transcription	Colon Smooth Muscle	Colon
5	chr9:116652200-116668400	Weak transcription	NH-A	brain
6	chr9:116653000-116663800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:116653200-116668400	Weak transcription	NHLF	lung
8	chr9:116653200-116669600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr9:116653200-116671800	Weak transcription	Fetal Lung	lung
10	chr9:116653400-116669000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:116653800-116665400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr9:116653800-116669000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:116653800-116674000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr9:116654400-116665400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:116654400-116668200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:116654600-116663600	Weak transcription	HSMM	muscle
17	chr9:116655400-116664000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr9:116658000-116668400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:116659400-116685400	Weak transcription	A549	lung
20	chr9:116660400-116668000	Weak transcription	HMEC	breast
21	chr9:116660600-116668400	Weak transcription	HUVEC	blood vessel
22	chr9:116661200-116663600	Weak transcription	Aorta	Aorta
23	chr9:116661800-116664000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr9:116661800-116664200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr9:116661800-116668000	Weak transcription	Pancreas	Pancrea
26	chr9:116661800-116669200	Weak transcription	Lung	lung
27	chr9:116662000-116671400	Weak transcription	Right Ventricle	heart
28	chr9:116662400-116665400	Weak transcription	Adipose Nuclei	Adipose
29	chr9:116662600-116664000	Strong transcription	Fetal Intestine Small	intestine
30	chr9:116662800-116664400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr9:116663000-116663800	Active TSS	Pancreatic Islets	Pancreatic Islet
32	chr9:116663200-116663600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr9:116663200-116664400	Strong transcription	Fetal Stomach	stomach
34	chr9:116663400-116663600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr9:116663400-116663600	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr9:116663400-116663600	Flanking Active TSS	Spleen	Spleen
37	chr9:116663400-116664000	Enhancers	Gastric	stomach
38	chr9:116663400-116664200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr9:116663400-116664200	Enhancers	Ovary	ovary
40	chr9:116663400-116664400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr9:116663400-116664400	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr9:116663400-116664400	Enhancers	NHDF-Ad	bronchial
43	chr9:116663400-116664600	Enhancers	Fetal Brain Male	brain
44	chr9:116663400-116664600	Enhancers	Fetal Muscle Leg	muscle
45	chr9:116663400-116664800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr9:116663400-116667400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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