Variant report

Variant	rs35412801
Chromosome Location	chr14:33154712-33154713
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11622177	0.84[AMR][1000 genomes]
rs11624857	0.83[AMR][1000 genomes]
rs11625040	0.83[AMR][1000 genomes]
rs12432071	0.84[AMR][1000 genomes]
rs12432183	0.83[AMR][1000 genomes]
rs12435259	0.83[AMR][1000 genomes]
rs12437036	0.85[AMR][1000 genomes]
rs12882674	0.84[AMR][1000 genomes]
rs66481544	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9788584	0.85[AMR][1000 genomes]
rs9788585	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33135000-33171800	Weak transcription	Psoas Muscle	Psoas
2	chr14:33141800-33169200	Weak transcription	Left Ventricle	heart
3	chr14:33144400-33165200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr14:33145200-33162200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr14:33145400-33156000	Weak transcription	Fetal Heart	heart
6	chr14:33145400-33156000	Weak transcription	Right Ventricle	heart
7	chr14:33145800-33171800	Weak transcription	Aorta	Aorta
8	chr14:33146600-33162200	Weak transcription	Fetal Muscle Leg	muscle
9	chr14:33149600-33155600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr14:33151600-33160400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr14:33151800-33162200	Weak transcription	Brain Angular Gyrus	brain
12	chr14:33151800-33164400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr14:33151800-33171200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr14:33152000-33171000	Weak transcription	Colon Smooth Muscle	Colon
15	chr14:33152200-33161800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr14:33152800-33162200	Weak transcription	HSMMtube	muscle
17	chr14:33153400-33162200	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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