Variant report

Variant	rs12882674
Chromosome Location	chr14:33148082-33148083
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11156755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11622177	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11624857	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11625040	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12432071	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12432183	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12435259	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12437036	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17099467	0.81[ASN][1000 genomes]
rs34123429	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35412801	0.84[AMR][1000 genomes]
rs66481544	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66721154	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67365238	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7148406	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9788584	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9788585	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33117800-33149200	Weak transcription	Colon Smooth Muscle	Colon
2	chr14:33131800-33149000	Weak transcription	Brain Substantia Nigra	brain
3	chr14:33132200-33149000	Weak transcription	Brain Angular Gyrus	brain
4	chr14:33135000-33171800	Weak transcription	Psoas Muscle	Psoas
5	chr14:33137400-33149200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr14:33137600-33149000	Weak transcription	Brain Hippocampus Middle	brain
7	chr14:33141800-33148800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr14:33141800-33169200	Weak transcription	Left Ventricle	heart
9	chr14:33144400-33165200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr14:33145200-33154400	Weak transcription	HSMM	muscle
11	chr14:33145200-33162200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr14:33145400-33151400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr14:33145400-33156000	Weak transcription	Fetal Heart	heart
14	chr14:33145400-33156000	Weak transcription	Right Ventricle	heart
15	chr14:33145800-33149000	Weak transcription	HSMMtube	muscle
16	chr14:33145800-33171800	Weak transcription	Aorta	Aorta
17	chr14:33146000-33150600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr14:33146600-33148200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr14:33146600-33149800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr14:33146600-33162200	Weak transcription	Fetal Muscle Leg	muscle
21	chr14:33147600-33149000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr14:33147800-33148800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr14:33147800-33149200	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links