Variant report

Variant	rs11624857
Chromosome Location	chr14:33170657-33170658
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:33170655..33172977-chr14:33175367..33177093,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11156755	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11622177	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11625040	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12432071	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12432183	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12435259	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12437036	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12437429	0.81[CEU][hapmap]
rs12882674	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17099467	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs34123429	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35412801	0.83[AMR][1000 genomes]
rs66481544	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs66721154	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67365238	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7148406	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9788584	0.95[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9788585	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33135000-33171800	Weak transcription	Psoas Muscle	Psoas
2	chr14:33145800-33171800	Weak transcription	Aorta	Aorta
3	chr14:33151800-33171200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr14:33152000-33171000	Weak transcription	Colon Smooth Muscle	Colon
5	chr14:33159400-33171000	Weak transcription	Fetal Heart	heart
6	chr14:33162600-33171600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr14:33162800-33171000	Weak transcription	Brain Substantia Nigra	brain
8	chr14:33163000-33171600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr14:33163400-33171800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr14:33164600-33171800	Weak transcription	Fetal Intestine Small	intestine
11	chr14:33165400-33171800	Weak transcription	HSMMtube	muscle
12	chr14:33165800-33171200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr14:33165800-33171800	Weak transcription	Fetal Muscle Leg	muscle
14	chr14:33166200-33171000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr14:33166200-33172200	Weak transcription	Fetal Brain Female	brain
16	chr14:33166800-33172000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr14:33167000-33171200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr14:33167200-33171400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr14:33167400-33171600	Weak transcription	HUVEC	blood vessel
20	chr14:33167400-33171800	Weak transcription	NHLF	lung
21	chr14:33167400-33172000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr14:33167600-33171800	Weak transcription	Brain Angular Gyrus	brain
23	chr14:33167600-33172400	Weak transcription	HSMM	muscle
24	chr14:33167800-33171800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr14:33167800-33171800	Weak transcription	Brain Hippocampus Middle	brain
26	chr14:33167800-33172000	Weak transcription	Osteobl	bone
27	chr14:33168000-33171000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr14:33168200-33171200	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr14:33168200-33171600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr14:33168200-33171600	Weak transcription	NHDF-Ad	bronchial
31	chr14:33168200-33171800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr14:33168200-33171800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr14:33168200-33171800	Weak transcription	HMEC	breast
34	chr14:33168400-33171800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr14:33168400-33172000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr14:33168600-33171000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr14:33168600-33171000	Weak transcription	NH-A	brain
38	chr14:33169400-33171000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr14:33169400-33171000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr14:33169400-33171800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr14:33169600-33171000	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr14:33169600-33171400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr14:33169600-33171400	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr14:33169600-33171800	Weak transcription	Brain Anterior Caudate	brain
45	chr14:33169600-33171800	Weak transcription	Left Ventricle	heart
46	chr14:33169600-33171800	Weak transcription	Right Ventricle	heart
47	chr14:33170600-33171200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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