Variant report

Variant	rs17099467
Chromosome Location	chr14:33174285-33174286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:33171058..33172957-chr14:33173094..33176023,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10148857	1.00[CEU][hapmap]
rs11156755	0.81[ASN][1000 genomes]
rs11622177	0.81[ASN][1000 genomes]
rs11624857	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11625040	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12432071	0.87[ASN][1000 genomes]
rs12432183	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12435259	0.81[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs12437036	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs12882674	0.81[ASN][1000 genomes]
rs7148406	0.81[ASN][1000 genomes]
rs9788584	0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs9788585	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33172200-33175400	Weak transcription	GM12878-XiMat	blood
2	chr14:33172200-33179600	Weak transcription	Colonic Mucosa	Colon
3	chr14:33172400-33177400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr14:33172600-33175600	Weak transcription	Aorta	Aorta
5	chr14:33172600-33177800	Weak transcription	HSMMtube	muscle
6	chr14:33172600-33178000	Weak transcription	Left Ventricle	heart
7	chr14:33172600-33178000	Weak transcription	Right Ventricle	heart
8	chr14:33172600-33178000	Weak transcription	HMEC	breast
9	chr14:33172600-33191600	Weak transcription	Psoas Muscle	Psoas
10	chr14:33172800-33177000	Weak transcription	Fetal Heart	heart
11	chr14:33172800-33177200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr14:33172800-33177800	Weak transcription	NH-A	brain
13	chr14:33172800-33177800	Weak transcription	Osteobl	bone
14	chr14:33172800-33178000	Weak transcription	Fetal Brain Male	brain
15	chr14:33172800-33178000	Weak transcription	HSMM	muscle
16	chr14:33173000-33177200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr14:33173000-33178000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr14:33173000-33178000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr14:33173000-33178000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr14:33173000-33178000	Weak transcription	Ovary	ovary
21	chr14:33173000-33179600	Weak transcription	Right Atrium	heart
22	chr14:33173000-33180200	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr14:33173200-33175000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr14:33173200-33175400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr14:33173200-33175800	Weak transcription	NHDF-Ad	bronchial
26	chr14:33173200-33177400	Weak transcription	NHLF	lung
27	chr14:33173200-33177800	Weak transcription	Fetal Lung	lung
28	chr14:33173200-33178000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr14:33173200-33178400	Weak transcription	Fetal Brain Female	brain
30	chr14:33173200-33194800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr14:33173400-33175400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr14:33173400-33175400	Weak transcription	Fetal Stomach	stomach
33	chr14:33173400-33175600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr14:33173400-33175600	Weak transcription	Brain Hippocampus Middle	brain
35	chr14:33173400-33175800	Weak transcription	Stomach Smooth Muscle	stomach
36	chr14:33173400-33177200	Weak transcription	Brain Anterior Caudate	brain
37	chr14:33173400-33177200	Weak transcription	Colon Smooth Muscle	Colon
38	chr14:33173400-33177400	Weak transcription	Brain Angular Gyrus	brain
39	chr14:33173400-33177400	Weak transcription	Brain Cingulate Gyrus	brain
40	chr14:33173400-33177400	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr14:33173400-33177800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr14:33173400-33177800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr14:33173400-33177800	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr14:33173600-33174800	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr14:33173600-33177600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr14:33173800-33175400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr14:33174200-33174600	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links