Variant report

Variant	rs11156755
Chromosome Location	chr14:33151805-33151806
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11622177	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11624857	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11625040	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12432071	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12432183	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12435259	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12437036	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12437429	0.85[CEU][hapmap]
rs12882674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17099467	0.81[ASN][1000 genomes]
rs34123429	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66481544	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs66721154	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67365238	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7148406	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9788584	0.95[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9788585	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33135000-33171800	Weak transcription	Psoas Muscle	Psoas
2	chr14:33141800-33169200	Weak transcription	Left Ventricle	heart
3	chr14:33144400-33165200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr14:33145200-33154400	Weak transcription	HSMM	muscle
5	chr14:33145200-33162200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr14:33145400-33156000	Weak transcription	Fetal Heart	heart
7	chr14:33145400-33156000	Weak transcription	Right Ventricle	heart
8	chr14:33145800-33171800	Weak transcription	Aorta	Aorta
9	chr14:33146600-33162200	Weak transcription	Fetal Muscle Leg	muscle
10	chr14:33149600-33152800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr14:33149600-33153000	Weak transcription	Brain Anterior Caudate	brain
12	chr14:33149600-33155600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr14:33151000-33152000	Enhancers	Brain Hippocampus Middle	brain
14	chr14:33151200-33152200	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr14:33151200-33152200	Enhancers	Fetal Stomach	stomach
16	chr14:33151400-33152000	Enhancers	Colon Smooth Muscle	Colon
17	chr14:33151400-33152800	Strong transcription	HSMMtube	muscle
18	chr14:33151600-33160400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr14:33151800-33152000	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr14:33151800-33152600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr14:33151800-33153000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr14:33151800-33153200	Weak transcription	Brain Substantia Nigra	brain
23	chr14:33151800-33162200	Weak transcription	Brain Angular Gyrus	brain
24	chr14:33151800-33164400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr14:33151800-33171200	Weak transcription	Stomach Smooth Muscle	stomach

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