Variant report

Variant	rs66721154
Chromosome Location	chr14:33134264-33134265
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11156755	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11622177	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11624857	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11625040	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12432071	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12432183	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12435259	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12437036	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12882674	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12895513	0.81[EUR][1000 genomes]
rs34123429	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66481544	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67365238	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7148406	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9788584	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9788585	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33115000-33134400	Weak transcription	Psoas Muscle	Psoas
2	chr14:33117800-33149200	Weak transcription	Colon Smooth Muscle	Colon
3	chr14:33126600-33134800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr14:33127400-33136200	Weak transcription	Brain Hippocampus Middle	brain
5	chr14:33131000-33134600	Weak transcription	Left Ventricle	heart
6	chr14:33131000-33134800	Weak transcription	Right Ventricle	heart
7	chr14:33131000-33144200	Weak transcription	HSMMtube	muscle
8	chr14:33131800-33136200	Weak transcription	Brain Anterior Caudate	brain
9	chr14:33131800-33149000	Weak transcription	Brain Substantia Nigra	brain
10	chr14:33132000-33135000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr14:33132000-33135000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr14:33132000-33135600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr14:33132200-33134600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr14:33132200-33149000	Weak transcription	Brain Angular Gyrus	brain
15	chr14:33133600-33144000	Weak transcription	Fetal Heart	heart
16	chr14:33134000-33135000	Enhancers	Aorta	Aorta
17	chr14:33134000-33135000	Enhancers	Fetal Stomach	stomach
18	chr14:33134200-33135200	Enhancers	Fetal Muscle Leg	muscle
19	chr14:33134200-33136600	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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