Variant report

Variant	rs35424768
Chromosome Location	chr2:98395653-98395654
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10432626	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11678558	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11678591	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11679828	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11680018	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11680321	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11680883	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11681535	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11684749	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11686881	0.82[EUR][1000 genomes]
rs11688829	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11690687	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11690737	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11691494	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11692010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11692470	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11692671	0.85[EUR][1000 genomes]
rs12052222	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12052836	0.82[ASN][1000 genomes]
rs12052846	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12104810	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12988571	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12995673	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13004090	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13006932	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13008968	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13020776	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13023980	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13028954	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13032265	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13032883	0.81[EUR][1000 genomes]
rs13034929	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1470483	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17488834	0.82[EUR][1000 genomes]
rs17488897	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17489454	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17489915	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17489984	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17490429	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1838797	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1875699	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2044458	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2044459	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2084176	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2278700	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2305143	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2871183	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3192177	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34149969	0.90[EUR][1000 genomes]
rs34373359	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34502870	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34528940	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34654057	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34974566	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35098301	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35218942	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35255677	0.81[EUR][1000 genomes]
rs35505530	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35783535	0.81[EUR][1000 genomes]
rs4311104	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4851462	0.85[EUR][1000 genomes]
rs55776387	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55886305	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57681139	0.95[ASN][1000 genomes]
rs58546246	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62156511	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6710088	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6711101	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6738389	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6746768	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6748124	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6757357	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71412824	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs717417	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7421146	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7564773	0.83[ASN][1000 genomes]
rs7583868	0.80[EUR][1000 genomes]
rs7601898	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs895438	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531382	chr2:98250628-98457616	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98352200-98398800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr2:98366200-98400000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr2:98368600-98413000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:98369600-98398800	Strong transcription	Fetal Muscle Leg	muscle
5	chr2:98370600-98407600	Weak transcription	HUVEC	blood vessel
6	chr2:98371200-98398600	Strong transcription	Primary B cells from cord blood	blood
7	chr2:98377400-98408000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr2:98377400-98410600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr2:98378600-98421400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr2:98381400-98397600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr2:98382800-98398600	Weak transcription	Small Intestine	intestine
12	chr2:98382800-98419800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr2:98383000-98408600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr2:98383200-98408800	Weak transcription	Fetal Brain Male	brain
15	chr2:98383200-98420200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr2:98383400-98405600	Weak transcription	A549	lung
17	chr2:98384000-98398800	Weak transcription	Stomach Mucosa	stomach
18	chr2:98385400-98399200	Strong transcription	Primary B cells from peripheral blood	blood
19	chr2:98385800-98398800	Strong transcription	Fetal Stomach	stomach
20	chr2:98386000-98398800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr2:98386200-98398000	Strong transcription	Fetal Intestine Large	intestine
22	chr2:98386200-98398800	Strong transcription	Fetal Muscle Trunk	muscle
23	chr2:98386600-98398200	Strong transcription	Skeletal Muscle Female	skeletal muscle
24	chr2:98387800-98408000	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr2:98387800-98408000	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr2:98387800-98438200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr2:98388000-98396200	Strong transcription	Sigmoid Colon	Sigmoid Colon
28	chr2:98388000-98398800	Strong transcription	Fetal Intestine Small	intestine
29	chr2:98388000-98407800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr2:98388000-98408600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr2:98389000-98408200	Weak transcription	NH-A	brain
32	chr2:98390200-98407600	Weak transcription	Psoas Muscle	Psoas
33	chr2:98390200-98408000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr2:98391000-98402400	Weak transcription	Rectal Smooth Muscle	rectum
35	chr2:98391400-98408000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr2:98392000-98405000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr2:98392200-98404400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr2:98392200-98407600	Weak transcription	NHLF	lung
39	chr2:98392200-98409200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr2:98392400-98395800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr2:98392400-98396400	Weak transcription	Brain Germinal Matrix	brain
42	chr2:98392400-98396600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr2:98392400-98397400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr2:98392400-98397400	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr2:98392400-98397400	Weak transcription	Esophagus	oesophagus
46	chr2:98392400-98397400	Weak transcription	Pancreas	Pancrea
47	chr2:98392400-98397600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr2:98392400-98398200	Weak transcription	Colonic Mucosa	Colon
49	chr2:98392400-98398200	Weak transcription	Right Ventricle	heart
50	chr2:98392400-98398200	Weak transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links