Variant report

Variant	rs35783535
Chromosome Location	chr2:98623227-98623228
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:98610477..98615183-chr2:98620528..98627750,9	MCF-7	breast:
2	chr2:98611291..98613108-chr2:98622137..98623652,2	K562	blood:

Variant related genes	Relation type
ENSG00000075568	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10432626	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11678591	0.88[EUR][1000 genomes]
rs11679828	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11680018	0.85[EUR][1000 genomes]
rs11680883	0.86[EUR][1000 genomes]
rs11681535	0.85[EUR][1000 genomes]
rs11684749	0.81[EUR][1000 genomes]
rs11688829	0.92[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11690687	0.85[EUR][1000 genomes]
rs11690737	0.85[EUR][1000 genomes]
rs11691494	0.81[EUR][1000 genomes]
rs11692010	0.81[EUR][1000 genomes]
rs11692470	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12052222	0.84[EUR][1000 genomes]
rs12052836	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12052846	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12104810	0.84[EUR][1000 genomes]
rs12988571	0.81[EUR][1000 genomes]
rs12995673	0.81[EUR][1000 genomes]
rs13008968	0.83[EUR][1000 genomes]
rs13020776	0.81[EUR][1000 genomes]
rs13023980	0.84[EUR][1000 genomes]
rs13028954	0.88[EUR][1000 genomes]
rs13032265	0.81[EUR][1000 genomes]
rs13032883	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13034929	0.81[EUR][1000 genomes]
rs1470483	0.81[EUR][1000 genomes]
rs17489454	0.81[EUR][1000 genomes]
rs17489915	0.81[EUR][1000 genomes]
rs17489984	0.81[EUR][1000 genomes]
rs17490429	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1838797	0.84[EUR][1000 genomes]
rs1875699	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2044459	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2084176	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2278700	0.82[EUR][1000 genomes]
rs2305143	0.81[EUR][1000 genomes]
rs2871183	0.81[EUR][1000 genomes]
rs3198055	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34373359	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs34502870	0.81[EUR][1000 genomes]
rs34503448	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34528940	0.83[EUR][1000 genomes]
rs34974566	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs35098301	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35218942	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs35255677	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35424768	0.81[EUR][1000 genomes]
rs35505530	0.86[EUR][1000 genomes]
rs35564270	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4311104	0.81[EUR][1000 genomes]
rs55776387	0.81[EUR][1000 genomes]
rs55861914	0.82[AFR][1000 genomes]
rs55886305	0.86[EUR][1000 genomes]
rs58546246	0.86[EUR][1000 genomes]
rs62156511	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6711101	0.81[EUR][1000 genomes]
rs6738389	0.81[EUR][1000 genomes]
rs6746768	0.85[EUR][1000 genomes]
rs6748124	0.86[EUR][1000 genomes]
rs6757357	0.86[EUR][1000 genomes]
rs71412824	0.81[EUR][1000 genomes]
rs717417	0.81[EUR][1000 genomes]
rs7421146	0.88[EUR][1000 genomes]
rs7564773	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7583868	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7601898	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs953320	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526360	chr2:98403683-98814054	Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv521568	chr2:98403683-98826203	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1004220	chr2:98423421-98816010	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1007259	chr2:98429744-98818080	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv535832	chr2:98429744-98818080	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1009218	chr2:98442640-98816010	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1003925	chr2:98442640-98821102	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv999442	chr2:98448732-98816010	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1013902	chr2:98454309-98818080	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv1013416	chr2:98472701-98688729	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv518056	chr2:98586842-99156296	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98613600-98626000	Weak transcription	Primary B cells from cord blood	blood
2	chr2:98613600-98626800	Weak transcription	Spleen	Spleen
3	chr2:98613800-98636200	Weak transcription	Stomach Mucosa	stomach
4	chr2:98620200-98637800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:98622600-98641800	Weak transcription	Gastric	stomach
6	chr2:98622800-98626800	Weak transcription	Pancreas	Pancrea

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