Variant report

Variant	rs62156511
Chromosome Location	chr10:112914260-112914261
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10432626	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11678591	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11679828	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11680018	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11680321	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11680883	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11681535	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11684749	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11688829	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11690687	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11690737	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11691494	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11692010	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11692470	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12052222	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12052836	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12052846	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12104810	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12988571	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12995673	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13004090	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13006932	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13008968	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13020776	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13023980	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13028954	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13032265	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13032883	0.87[EUR][1000 genomes]
rs13034929	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1470483	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17488897	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17489287	0.89[ASN][1000 genomes]
rs17489454	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17489915	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17489984	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17490429	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1838797	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1875699	0.86[EUR][1000 genomes]
rs2044458	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2044459	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2084176	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2278700	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2305143	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2871183	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3198055	0.84[EUR][1000 genomes]
rs34149969	0.80[EUR][1000 genomes]
rs34373359	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34502870	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34503448	0.86[EUR][1000 genomes]
rs34528940	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34654057	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34974566	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35098301	0.86[EUR][1000 genomes]
rs35218942	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35255677	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35424768	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35505530	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35564270	0.85[EUR][1000 genomes]
rs35783535	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4311104	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55776387	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55886305	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56210806	0.81[ASN][1000 genomes]
rs58546246	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6710088	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6711101	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6738389	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6746768	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6748124	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6757357	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71412824	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71429376	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs717417	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7421146	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7564773	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7583868	0.86[EUR][1000 genomes]
rs7601898	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs895438	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs953320	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv467456	chr10:112909105-112941780	Weak transcription Enhancers Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv552173	chr10:112909105-112941780	Weak transcription Bivalent Enhancer Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112912400-112918000	Weak transcription	Placenta Amnion	Placenta Amnion

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