Variant report

Variant	rs35564270
Chromosome Location	chr2:98602165-98602166
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:98600951..98603752-chr2:98713774..98716598,2	K562	blood:
2	chr2:98599318..98603121-chr2:98611539..98613337,3	K562	blood:
3	chr2:98600571..98603645-chr2:98610027..98612734,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000075568	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10432626	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11678591	0.86[EUR][1000 genomes]
rs11679828	0.84[EUR][1000 genomes]
rs11680018	0.83[EUR][1000 genomes]
rs11680883	0.84[EUR][1000 genomes]
rs11681535	0.83[EUR][1000 genomes]
rs11688829	0.85[EUR][1000 genomes]
rs11690687	0.83[EUR][1000 genomes]
rs11690737	0.83[EUR][1000 genomes]
rs11692470	0.84[EUR][1000 genomes]
rs12052222	0.82[EUR][1000 genomes]
rs12052836	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12052846	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12104810	0.82[EUR][1000 genomes]
rs13008968	0.81[EUR][1000 genomes]
rs13023980	0.82[EUR][1000 genomes]
rs13028954	0.86[EUR][1000 genomes]
rs13032883	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17490429	0.82[EUR][1000 genomes]
rs1838797	0.82[EUR][1000 genomes]
rs1875699	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2044459	0.82[EUR][1000 genomes]
rs2084176	0.82[EUR][1000 genomes]
rs3198055	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34373359	0.82[EUR][1000 genomes]
rs34503448	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34528940	0.81[EUR][1000 genomes]
rs34974566	0.86[EUR][1000 genomes]
rs35098301	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35218942	0.85[EUR][1000 genomes]
rs35255677	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35505530	0.84[EUR][1000 genomes]
rs35783535	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55886305	0.84[EUR][1000 genomes]
rs58546246	0.84[EUR][1000 genomes]
rs62156511	0.85[EUR][1000 genomes]
rs6746768	0.83[EUR][1000 genomes]
rs6748124	0.84[EUR][1000 genomes]
rs6757357	0.84[EUR][1000 genomes]
rs7421146	0.86[EUR][1000 genomes]
rs7564773	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7583868	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7601898	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs953320	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526360	chr2:98403683-98814054	Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv521568	chr2:98403683-98826203	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1004220	chr2:98423421-98816010	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1007259	chr2:98429744-98818080	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv535832	chr2:98429744-98818080	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1009218	chr2:98442640-98816010	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1003925	chr2:98442640-98821102	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv999442	chr2:98448732-98816010	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1013902	chr2:98454309-98818080	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv1013416	chr2:98472701-98688729	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv518056	chr2:98586842-99156296	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98585000-98608400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr2:98592200-98606200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr2:98592600-98603000	Weak transcription	Ovary	ovary
4	chr2:98592600-98604600	Weak transcription	Fetal Brain Male	brain
5	chr2:98593200-98606400	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr2:98594600-98602600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr2:98595800-98606400	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr2:98596000-98609400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr2:98596200-98607800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr2:98596200-98607800	Weak transcription	Lung	lung
11	chr2:98596400-98602400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr2:98596600-98602600	Weak transcription	HMEC	breast
13	chr2:98596800-98608400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr2:98597000-98602800	Weak transcription	Dnd41	blood
15	chr2:98597000-98605600	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr2:98597000-98609800	Weak transcription	Fetal Stomach	stomach
17	chr2:98597200-98604600	Weak transcription	Primary T cells from cord blood	blood
18	chr2:98597400-98602600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr2:98597800-98602400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr2:98598200-98607800	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr2:98598600-98603000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr2:98598600-98604200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr2:98598600-98606200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr2:98598600-98610400	Weak transcription	Placenta	Placenta
25	chr2:98599000-98602800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr2:98599400-98603000	Weak transcription	Colon Smooth Muscle	Colon
27	chr2:98599800-98603000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr2:98599800-98606000	Weak transcription	HSMM	muscle
29	chr2:98600000-98607600	Weak transcription	NHEK	skin
30	chr2:98600200-98603000	Weak transcription	Small Intestine	intestine
31	chr2:98600200-98604200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr2:98600200-98604400	Weak transcription	Primary B cells from cord blood	blood
33	chr2:98600200-98604400	Weak transcription	Brain Germinal Matrix	brain
34	chr2:98600200-98607800	Weak transcription	Spleen	Spleen
35	chr2:98600200-98609400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr2:98600200-98611600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr2:98600400-98602200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr2:98600400-98603000	Weak transcription	Brain Anterior Caudate	brain
39	chr2:98600400-98603000	Weak transcription	Fetal Intestine Small	intestine
40	chr2:98600400-98603000	Weak transcription	HepG2	liver
41	chr2:98600400-98603200	Weak transcription	Duodenum Mucosa	Duodenum
42	chr2:98600400-98604600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr2:98600400-98604800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr2:98600400-98605000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr2:98600400-98606200	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr2:98600400-98607600	Weak transcription	Gastric	stomach
47	chr2:98600400-98607800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr2:98600400-98609800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr2:98600400-98610200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr2:98600600-98602800	Weak transcription	Duodenum Smooth Muscle	Duodenum

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