Variant report

Variant	rs35438327
Chromosome Location	chr6:15454022-15454023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15451813..15454301-chr6:15454611..15456200,2	MCF-7	breast:
2	chr6:15445585..15449236-chr6:15452197..15455366,5	MCF-7	breast:
3	chr6:15446921..15448738-chr6:15452491..15454200,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10484354	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11961516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11961748	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11961827	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11963285	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11964758	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11965505	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11969359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16876316	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16876327	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16876361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35801290	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60535196	0.93[AFR][1000 genomes]
rs6905116	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73365205	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73365221	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73365227	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73365229	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73365234	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73367315	1.00[AMR][1000 genomes]
rs7743283	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7757154	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7769123	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15435800-15487600	Weak transcription	Colonic Mucosa	Colon
2	chr6:15439000-15458000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:15440000-15468600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:15440600-15454800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:15444600-15477400	Weak transcription	Hela-S3	cervix
6	chr6:15444800-15457200	Weak transcription	Fetal Heart	heart
7	chr6:15444800-15468800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:15445400-15457600	Weak transcription	Fetal Brain Male	brain
9	chr6:15445400-15458600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:15445400-15474000	Weak transcription	NH-A	brain
11	chr6:15445600-15462600	Weak transcription	NHLF	lung
12	chr6:15445800-15460000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:15446000-15456200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr6:15446000-15459200	Weak transcription	Ovary	ovary
15	chr6:15446000-15462800	Weak transcription	HSMMtube	muscle
16	chr6:15446600-15479800	Weak transcription	Gastric	stomach
17	chr6:15446800-15458600	Weak transcription	Right Ventricle	heart
18	chr6:15447800-15460400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:15448200-15455000	Weak transcription	Esophagus	oesophagus
20	chr6:15448200-15479800	Weak transcription	Pancreas	Pancrea
21	chr6:15449000-15458600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:15449600-15457400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:15449600-15457400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr6:15449600-15458600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr6:15449800-15457400	Weak transcription	Brain Angular Gyrus	brain
26	chr6:15449800-15457600	Weak transcription	Placenta	Placenta
27	chr6:15449800-15462800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:15450000-15455200	Weak transcription	Lung	lung
29	chr6:15450000-15456200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:15450000-15457000	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr6:15450000-15458600	Weak transcription	Spleen	Spleen
32	chr6:15450600-15457200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:15451600-15454400	Strong transcription	H1 Cell Line	embryonic stem cell
34	chr6:15451600-15455000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr6:15451800-15454200	Strong transcription	H9 Cell Line	embryonic stem cell
36	chr6:15451800-15454600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr6:15451800-15454800	Strong transcription	NHEK	skin
38	chr6:15451800-15455200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr6:15452000-15454200	Strong transcription	HMEC	breast
40	chr6:15452000-15454600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:15452000-15454800	Enhancers	Adipose Nuclei	Adipose
42	chr6:15452000-15455600	Strong transcription	K562	blood
43	chr6:15452000-15459200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr6:15452200-15454200	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr6:15452200-15454200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr6:15452200-15454200	Strong transcription	Fetal Lung	lung
47	chr6:15452200-15454200	Strong transcription	Fetal Muscle Trunk	muscle
48	chr6:15452200-15454800	Enhancers	Psoas Muscle	Psoas
49	chr6:15452200-15455400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr6:15452200-15455400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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