Variant report

Variant	rs7757154
Chromosome Location	chr6:15438829-15438830
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15427923..15429748-chr6:15438037..15440441,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10484354	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11961516	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11961748	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11961827	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11963285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11964758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11965505	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11969359	0.89[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16876316	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16876327	0.89[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16876361	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35438327	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35801290	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3857641	1.00[MEX][hapmap]
rs60535196	1.00[AFR][1000 genomes]
rs6904997	1.00[MEX][hapmap]
rs6905116	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6922136	1.00[MEX][hapmap]
rs73365205	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73365221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73365227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73365229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73365234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73367315	1.00[AMR][1000 genomes]
rs7743283	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7748631	0.84[YRI][hapmap]
rs7767966	0.86[YRI][hapmap]
rs7769123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv949448	chr6:15279490-15449441	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1025512	chr6:15291551-15452395	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv538143	chr6:15291551-15452395	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15417000-15452200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr6:15424600-15442000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:15425600-15445400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:15426000-15441000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:15426400-15440400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:15426400-15442000	Enhancers	Primary B cells from peripheral blood	blood
7	chr6:15427000-15450800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:15428000-15441800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr6:15428800-15441600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr6:15429200-15446000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:15430200-15439600	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr6:15430200-15439600	Weak transcription	NHLF	lung
13	chr6:15430800-15440800	Enhancers	H1 Cell Line	embryonic stem cell
14	chr6:15430800-15441000	Enhancers	H9 Cell Line	embryonic stem cell
15	chr6:15430800-15441600	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr6:15431000-15441600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:15431800-15441600	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr6:15432400-15439000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr6:15432400-15441600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr6:15432800-15439600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:15433000-15443200	Weak transcription	Hela-S3	cervix
22	chr6:15433400-15439800	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr6:15433600-15439600	Weak transcription	NHDF-Ad	bronchial
24	chr6:15433800-15439400	Weak transcription	Fetal Stomach	stomach
25	chr6:15434000-15439400	Weak transcription	Osteobl	bone
26	chr6:15434000-15441800	Enhancers	Primary T cells from cord blood	blood
27	chr6:15434000-15441800	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr6:15434200-15439200	Weak transcription	Stomach Smooth Muscle	stomach
29	chr6:15434200-15439400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:15434200-15439400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr6:15434400-15441600	Weak transcription	Ovary	ovary
32	chr6:15434400-15444400	Weak transcription	HSMMtube	muscle
33	chr6:15435000-15439600	Weak transcription	Fetal Lung	lung
34	chr6:15435000-15439600	Weak transcription	HMEC	breast
35	chr6:15435000-15448000	Weak transcription	Rectal Smooth Muscle	rectum
36	chr6:15435200-15439000	Weak transcription	Brain Hippocampus Middle	brain
37	chr6:15435600-15439600	Weak transcription	Brain Anterior Caudate	brain
38	chr6:15435800-15443400	Weak transcription	HepG2	liver
39	chr6:15435800-15445400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:15435800-15446000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:15435800-15453600	Weak transcription	Fetal Intestine Small	intestine
42	chr6:15435800-15487600	Weak transcription	Colonic Mucosa	Colon
43	chr6:15436000-15440000	Enhancers	Primary B cells from cord blood	blood
44	chr6:15436000-15441600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr6:15436000-15447000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr6:15436200-15439600	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr6:15436200-15442000	Enhancers	Primary hematopoietic stem cells	blood
48	chr6:15436600-15439600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr6:15436600-15439600	Weak transcription	HUVEC	blood vessel
50	chr6:15436600-15440200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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