Variant report

Variant	rs6922136
Chromosome Location	chr6:15427162-15427163
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15424279..15427255-chr6:15429243..15432157,3	K562	blood:
2	chr6:15244038..15245589-chr6:15426739..15429228,2	K562	blood:
3	chr6:15426491..15428000-chr6:15435400..15438225,2	MCF-7	breast:
4	chr6:15426395..15428488-chr6:15429543..15431690,2	MCF-7	breast:
5	chr6:15422447..15425279-chr6:15425487..15427798,3	K562	blood:

Variant related genes	Relation type
ENSG00000271888	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10484354	1.00[MEX][hapmap]
rs11962577	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11969192	1.00[EUR][1000 genomes]
rs11969359	1.00[MEX][hapmap]
rs12527989	1.00[CEU][hapmap]
rs16876316	1.00[MEX][hapmap]
rs16876327	1.00[MEX][hapmap]
rs16876354	0.95[YRI][hapmap]
rs2299051	0.95[YRI][hapmap]
rs3857641	1.00[MEX][hapmap]
rs57783281	1.00[EUR][1000 genomes]
rs58378663	1.00[EUR][1000 genomes]
rs60416461	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6904997	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6906027	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6914974	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs73365251	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7757154	1.00[MEX][hapmap]
rs7767966	0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv949448	chr6:15279490-15449441	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1025512	chr6:15291551-15452395	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv538143	chr6:15291551-15452395	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15404800-15427600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:15404800-15429000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:15414200-15427200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:15414200-15427400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:15414200-15429200	Weak transcription	HSMM	muscle
6	chr6:15414600-15427800	Weak transcription	Fetal Brain Male	brain
7	chr6:15417000-15452200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:15420400-15427400	Weak transcription	K562	blood
9	chr6:15421200-15427600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr6:15421400-15427400	Weak transcription	Brain Germinal Matrix	brain
11	chr6:15421400-15427400	Weak transcription	Fetal Intestine Small	intestine
12	chr6:15421400-15432400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:15421600-15427200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr6:15421600-15429600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:15421600-15430800	Weak transcription	Aorta	Aorta
16	chr6:15422400-15430200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr6:15422800-15427400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:15422800-15430800	Weak transcription	Gastric	stomach
19	chr6:15422800-15433400	Weak transcription	Colonic Mucosa	Colon
20	chr6:15423000-15427200	Weak transcription	Small Intestine	intestine
21	chr6:15423000-15427800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr6:15423000-15427800	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr6:15423000-15429200	Weak transcription	Stomach Mucosa	stomach
24	chr6:15423400-15427400	Weak transcription	Thymus	Thymus
25	chr6:15423400-15427600	Weak transcription	Fetal Kidney	kidney
26	chr6:15423400-15427800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr6:15423600-15427200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr6:15423600-15432600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr6:15423800-15427400	Weak transcription	Fetal Stomach	stomach
30	chr6:15423800-15429200	Weak transcription	Osteobl	bone
31	chr6:15424000-15427400	Weak transcription	Dnd41	blood
32	chr6:15424000-15427800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:15424000-15429200	Weak transcription	HSMMtube	muscle
34	chr6:15424200-15427400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr6:15424200-15429600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:15424200-15430800	Weak transcription	Esophagus	oesophagus
37	chr6:15424400-15427200	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr6:15424400-15427800	Weak transcription	Spleen	Spleen
39	chr6:15424600-15442000	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr6:15425000-15430000	Enhancers	H1 Cell Line	embryonic stem cell
41	chr6:15425200-15428200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr6:15425200-15429800	Enhancers	H9 Cell Line	embryonic stem cell
43	chr6:15425600-15428000	Genic enhancers	HUES48 Cell Line	embryonic stem cell
44	chr6:15425600-15428000	Enhancers	Right Atrium	heart
45	chr6:15425600-15429200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:15425600-15445400	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr6:15425800-15427800	Enhancers	Primary T cells from cord blood	blood
48	chr6:15425800-15428000	Enhancers	Right Ventricle	heart
49	chr6:15425800-15428200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr6:15425800-15428200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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