Variant report

Variant	rs58378663
Chromosome Location	chr6:15578398-15578399
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15569507..15572104-chr6:15574180..15578987,6	K562	blood:
2	chr6:15576702..15579693-chr6:15598481..15600049,2	K562	blood:
3	chr6:15527676..15529584-chr6:15577148..15578678,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11961759	1.00[AMR][1000 genomes]
rs11962577	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11968596	1.00[AMR][1000 genomes]
rs11969192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2056941	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56737720	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56786898	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57160689	0.87[AFR][1000 genomes]
rs58620746	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59099772	0.97[AFR][1000 genomes]
rs60416461	1.00[EUR][1000 genomes]
rs61125864	0.92[AFR][1000 genomes]
rs61319348	1.00[AMR][1000 genomes]
rs61702458	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61739410	1.00[AMR][1000 genomes]
rs6904997	1.00[EUR][1000 genomes]
rs6906027	1.00[EUR][1000 genomes]
rs6922136	1.00[EUR][1000 genomes]
rs73365251	1.00[EUR][1000 genomes]
rs73369573	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73369575	1.00[AMR][1000 genomes]
rs73371522	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73371528	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73371544	1.00[AMR][1000 genomes]
rs73371559	1.00[AMR][1000 genomes]
rs73371582	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373623	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373667	1.00[AMR][1000 genomes]
rs73373668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428473	chr6:15522653-15595739	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15534400-15609800	Weak transcription	Thymus	Thymus
2	chr6:15562200-15580400	Weak transcription	Fetal Thymus	thymus
3	chr6:15562200-15588800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:15563400-15604200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:15564000-15586800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:15565400-15593200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:15565800-15595800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:15567200-15593800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:15570000-15581200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr6:15570200-15581000	Weak transcription	Left Ventricle	heart
11	chr6:15570400-15583400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr6:15571200-15593000	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr6:15574000-15596800	Weak transcription	Fetal Intestine Small	intestine
14	chr6:15574800-15592400	Weak transcription	Dnd41	blood
15	chr6:15574800-15603600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr6:15575400-15592600	Weak transcription	Primary T cells from cord blood	blood
17	chr6:15576000-15596200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:15576400-15579000	Weak transcription	GM12878-XiMat	blood
19	chr6:15576400-15580400	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr6:15576400-15582000	Weak transcription	K562	blood
21	chr6:15576800-15578800	Enhancers	Esophagus	oesophagus
22	chr6:15577000-15581000	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr6:15577200-15578600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr6:15577400-15578600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:15577400-15578600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr6:15577400-15578600	Enhancers	Lung	lung
27	chr6:15577400-15578800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:15577400-15578800	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr6:15577400-15578800	Strong transcription	Primary B cells from cord blood	blood
30	chr6:15577400-15578800	Enhancers	Fetal Stomach	stomach
31	chr6:15577600-15578400	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr6:15577600-15578400	Enhancers	Spleen	Spleen
33	chr6:15577600-15578600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:15577600-15578600	Enhancers	Fetal Muscle Trunk	muscle
35	chr6:15577600-15578600	Enhancers	A549	lung
36	chr6:15577600-15578800	Enhancers	H1 Cell Line	embryonic stem cell
37	chr6:15577600-15578800	Enhancers	Aorta	Aorta
38	chr6:15577600-15579200	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr6:15577600-15579200	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr6:15577600-15579200	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr6:15577600-15579200	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr6:15577800-15578400	Enhancers	H9 Cell Line	embryonic stem cell
43	chr6:15577800-15578600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:15577800-15578600	Enhancers	Gastric	stomach
45	chr6:15577800-15578600	Enhancers	Stomach Mucosa	stomach
46	chr6:15577800-15578800	Enhancers	Brain Anterior Caudate	brain
47	chr6:15578000-15578400	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr6:15578000-15578600	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr6:15578000-15579000	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr6:15578200-15578600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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