Variant report

Variant	rs59099772
Chromosome Location	chr6:15611388-15611389
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15608462..15611439-chr6:15612716..15614528,3	K562	blood:
2	chr6:15605789..15608312-chr6:15608861..15612211,4	K562	blood:
3	chr6:15610180..15611688-chr6:15615613..15618447,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11962577	0.97[AFR][1000 genomes]
rs11968596	0.80[AFR][1000 genomes]
rs11969192	0.97[AFR][1000 genomes]
rs2056941	1.00[AFR][1000 genomes]
rs56737720	1.00[AFR][1000 genomes]
rs56786898	1.00[AFR][1000 genomes]
rs57160689	0.89[AFR][1000 genomes]
rs58378663	0.97[AFR][1000 genomes]
rs58620746	1.00[AFR][1000 genomes]
rs61125864	0.94[AFR][1000 genomes]
rs61702458	1.00[AFR][1000 genomes]
rs73369573	0.97[AFR][1000 genomes]
rs73371522	1.00[AFR][1000 genomes]
rs73371528	1.00[AFR][1000 genomes]
rs73371544	0.80[AFR][1000 genomes]
rs73371582	1.00[AFR][1000 genomes]
rs73373623	1.00[AFR][1000 genomes]
rs73373667	0.80[AFR][1000 genomes]
rs73373668	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15587000-15616200	Weak transcription	Pancreas	Pancrea
2	chr6:15589800-15614400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:15593000-15613800	Weak transcription	Gastric	stomach
4	chr6:15593200-15615800	Weak transcription	HepG2	liver
5	chr6:15593800-15621800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr6:15594000-15612800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr6:15594000-15616200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:15594000-15621800	Weak transcription	Brain Hippocampus Middle	brain
9	chr6:15594000-15626600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr6:15594600-15614600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:15596000-15611400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr6:15596000-15614400	Weak transcription	Lung	lung
13	chr6:15596200-15614200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:15596400-15616600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:15596400-15621000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr6:15596400-15621800	Weak transcription	Brain Angular Gyrus	brain
17	chr6:15596600-15621800	Weak transcription	Ovary	ovary
18	chr6:15596800-15621800	Weak transcription	Brain Anterior Caudate	brain
19	chr6:15597000-15612800	Weak transcription	Placenta	Placenta
20	chr6:15597000-15614200	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr6:15597000-15621600	Weak transcription	Colon Smooth Muscle	Colon
22	chr6:15597000-15641600	Weak transcription	Spleen	Spleen
23	chr6:15597200-15612600	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr6:15597800-15618400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr6:15599600-15616200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr6:15600000-15660400	Weak transcription	Hela-S3	cervix
27	chr6:15601000-15621800	Weak transcription	Liver	Liver
28	chr6:15601400-15613600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr6:15602800-15614200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr6:15602800-15615800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr6:15603200-15612800	Weak transcription	K562	blood
32	chr6:15603200-15616000	Weak transcription	Fetal Kidney	kidney
33	chr6:15604000-15612400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr6:15604000-15616000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr6:15604600-15616000	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr6:15604800-15615800	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr6:15604800-15623600	Weak transcription	Right Ventricle	heart
38	chr6:15605800-15616000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr6:15606400-15612200	Strong transcription	Primary B cells from peripheral blood	blood
40	chr6:15606800-15618600	Weak transcription	Brain Substantia Nigra	brain
41	chr6:15607000-15616000	Weak transcription	Psoas Muscle	Psoas
42	chr6:15607200-15621400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:15607200-15621800	Weak transcription	Small Intestine	intestine
44	chr6:15607200-15623400	Weak transcription	Brain Germinal Matrix	brain
45	chr6:15607400-15622000	Weak transcription	Fetal Brain Male	brain
46	chr6:15607800-15612000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr6:15607800-15616800	Strong transcription	Dnd41	blood
48	chr6:15608600-15612200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr6:15608600-15612600	Strong transcription	Duodenum Mucosa	Duodenum
50	chr6:15608600-15614600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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