Variant report

Variant	rs73371522
Chromosome Location	chr6:15574794-15574795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15569507..15572104-chr6:15574180..15578987,6	K562	blood:
2	chr6:15573555..15576542-chr6:15582546..15584849,2	K562	blood:
3	chr6:15569660..15571497-chr6:15573747..15576403,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11961759	1.00[AMR][1000 genomes]
rs11962577	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11968596	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11969192	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2056941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56737720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56786898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57160689	0.89[AFR][1000 genomes]
rs58378663	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58620746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59099772	1.00[AFR][1000 genomes]
rs61125864	0.94[AFR][1000 genomes]
rs61319348	1.00[AMR][1000 genomes]
rs61702458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61739410	1.00[AMR][1000 genomes]
rs73369573	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73369575	1.00[AMR][1000 genomes]
rs73371528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73371544	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73371559	1.00[AMR][1000 genomes]
rs73371582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373667	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373668	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428473	chr6:15522653-15595739	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15534400-15609800	Weak transcription	Thymus	Thymus
2	chr6:15552400-15577400	Weak transcription	Lung	lung
3	chr6:15552400-15578200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:15554400-15577600	Weak transcription	Aorta	Aorta
5	chr6:15557200-15577600	Weak transcription	Spleen	Spleen
6	chr6:15561600-15578200	Weak transcription	Pancreas	Pancrea
7	chr6:15562200-15580400	Weak transcription	Fetal Thymus	thymus
8	chr6:15562200-15588800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:15563400-15577600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:15563400-15577800	Weak transcription	Brain Anterior Caudate	brain
11	chr6:15563400-15604200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:15564000-15586800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:15565400-15593200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:15565800-15595800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr6:15567200-15593800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:15570000-15578000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:15570000-15578200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr6:15570000-15581200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr6:15570200-15575000	Weak transcription	Right Ventricle	heart
20	chr6:15570200-15581000	Weak transcription	Left Ventricle	heart
21	chr6:15570400-15578200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:15570400-15578200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr6:15570400-15583400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr6:15571200-15593000	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr6:15571800-15574800	Strong transcription	Primary B cells from cord blood	blood
26	chr6:15572200-15576000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:15572400-15575000	Enhancers	Placenta	Placenta
28	chr6:15572800-15574800	Strong transcription	Primary B cells from peripheral blood	blood
29	chr6:15573000-15575000	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr6:15573000-15576400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr6:15573200-15574800	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr6:15573200-15575000	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr6:15573200-15575200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr6:15573200-15577800	Weak transcription	Gastric	stomach
35	chr6:15573400-15574800	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr6:15574000-15596800	Weak transcription	Fetal Intestine Small	intestine
37	chr6:15574200-15574800	Strong transcription	Dnd41	blood
38	chr6:15574200-15575000	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr6:15574200-15575400	Strong transcription	Primary T cells from cord blood	blood
40	chr6:15574400-15574800	Enhancers	H9 Cell Line	embryonic stem cell
41	chr6:15574400-15575000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:15574400-15575000	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr6:15574400-15575200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr6:15574400-15575200	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr6:15574400-15575200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr6:15574400-15575400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr6:15574400-15575600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr6:15574400-15576200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:15574400-15576200	Enhancers	Fetal Kidney	kidney
50	chr6:15574400-15576400	Enhancers	K562	blood

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