Variant report

Variant	rs73371528
Chromosome Location	chr6:15584569-15584570
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15573555..15576542-chr6:15582546..15584849,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11961759	1.00[AMR][1000 genomes]
rs11962577	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11968596	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11969192	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2056941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56737720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56786898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57160689	0.89[AFR][1000 genomes]
rs58378663	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58620746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59099772	1.00[AFR][1000 genomes]
rs61125864	0.94[AFR][1000 genomes]
rs61319348	1.00[AMR][1000 genomes]
rs61702458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61739410	1.00[AMR][1000 genomes]
rs73369573	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73369575	1.00[AMR][1000 genomes]
rs73371522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73371544	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73371559	1.00[AMR][1000 genomes]
rs73371582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373667	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373668	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428473	chr6:15522653-15595739	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15534400-15609800	Weak transcription	Thymus	Thymus
2	chr6:15562200-15588800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:15563400-15604200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:15564000-15586800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:15565400-15593200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:15565800-15595800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:15567200-15593800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:15571200-15593000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr6:15574000-15596800	Weak transcription	Fetal Intestine Small	intestine
10	chr6:15574800-15592400	Weak transcription	Dnd41	blood
11	chr6:15574800-15603600	Weak transcription	Primary B cells from peripheral blood	blood
12	chr6:15575400-15592600	Weak transcription	Primary T cells from cord blood	blood
13	chr6:15576000-15596200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:15578400-15586000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr6:15578600-15586000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:15578600-15586800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:15578600-15596200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr6:15578800-15595800	Weak transcription	Aorta	Aorta
19	chr6:15580800-15592200	Weak transcription	Primary B cells from cord blood	blood
20	chr6:15581400-15595800	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr6:15581600-15586000	Weak transcription	Fetal Heart	heart
22	chr6:15582800-15587000	Weak transcription	K562	blood
23	chr6:15583200-15586600	Weak transcription	NHDF-Ad	bronchial
24	chr6:15583600-15584600	Active TSS	Brain Anterior Caudate	brain
25	chr6:15583800-15586000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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