Variant report

Variant	rs61319348
Chromosome Location	chr6:15645552-15645553
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11961759	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11962577	1.00[AMR][1000 genomes]
rs11966778	0.84[AFR][1000 genomes]
rs11968596	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11969192	1.00[AMR][1000 genomes]
rs2056941	1.00[AMR][1000 genomes]
rs56737720	1.00[AMR][1000 genomes]
rs56786898	1.00[AMR][1000 genomes]
rs58378663	1.00[AMR][1000 genomes]
rs58620746	1.00[AMR][1000 genomes]
rs61702458	1.00[AMR][1000 genomes]
rs61739410	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73369573	1.00[AMR][1000 genomes]
rs73369575	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73371522	1.00[AMR][1000 genomes]
rs73371528	1.00[AMR][1000 genomes]
rs73371544	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73371559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73371582	1.00[AMR][1000 genomes]
rs73373623	1.00[AMR][1000 genomes]
rs73373667	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373668	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15600000-15660400	Weak transcription	Hela-S3	cervix
2	chr6:15615000-15652600	Weak transcription	Colonic Mucosa	Colon
3	chr6:15615200-15662200	Weak transcription	Gastric	stomach
4	chr6:15616800-15662000	Weak transcription	Placenta	Placenta
5	chr6:15616800-15662200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:15621800-15662200	Weak transcription	Pancreas	Pancrea
7	chr6:15622200-15649200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:15623800-15662000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:15628600-15662000	Weak transcription	NHLF	lung
10	chr6:15629400-15649200	Weak transcription	HSMM	muscle
11	chr6:15629400-15650400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:15629600-15654000	Weak transcription	Osteobl	bone
13	chr6:15629600-15657000	Weak transcription	K562	blood
14	chr6:15629600-15661800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:15632200-15662000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr6:15634400-15657600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr6:15634600-15657600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:15637200-15662000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:15638200-15662000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:15638800-15649800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:15639400-15648400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr6:15639400-15662200	Weak transcription	Left Ventricle	heart
23	chr6:15640600-15646200	ZNF genes & repeats	Primary B cells from cord blood	blood
24	chr6:15640800-15646200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
25	chr6:15641000-15649600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:15641000-15651600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:15641800-15646400	ZNF genes & repeats	Dnd41	blood
28	chr6:15642000-15662000	Weak transcription	Brain Angular Gyrus	brain
29	chr6:15642200-15662200	Weak transcription	Aorta	Aorta
30	chr6:15642400-15661400	Weak transcription	Spleen	Spleen
31	chr6:15642600-15662200	Weak transcription	Esophagus	oesophagus
32	chr6:15642800-15648400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr6:15642800-15650400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:15642800-15662000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr6:15642800-15662000	Weak transcription	Lung	lung
36	chr6:15642800-15662000	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr6:15643000-15658600	Weak transcription	Fetal Thymus	thymus
38	chr6:15643000-15662000	Weak transcription	Fetal Stomach	stomach
39	chr6:15643800-15649400	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr6:15644200-15647200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr6:15644400-15649200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:15644400-15658600	Weak transcription	Psoas Muscle	Psoas
43	chr6:15644400-15661800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr6:15644400-15662000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr6:15644600-15649000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr6:15644800-15645800	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr6:15644800-15649200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr6:15644800-15651200	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr6:15644800-15658600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr6:15644800-15661800	Weak transcription	HepG2	liver

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