Variant report

Variant	rs58620746
Chromosome Location	chr6:15570455-15570456
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15569507..15572104-chr6:15574180..15578987,6	K562	blood:
2	chr6:15551478..15555185-chr6:15568450..15571050,3	K562	blood:
3	chr6:15570441..15572799-chr6:15659666..15662053,2	K562	blood:
4	chr6:15553685..15556253-chr6:15569406..15571140,2	K562	blood:
5	chr6:15568618..15570956-chr6:16004437..16007053,2	K562	blood:
6	chr6:15568715..15571143-chr6:15594393..15596113,2	K562	blood:
7	chr6:15569660..15571497-chr6:15573747..15576403,2	K562	blood:
8	chr6:15568594..15571158-chr6:15619622..15621812,2	K562	blood:

No data

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11961759	1.00[AMR][1000 genomes]
rs11962577	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11968596	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11969192	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2056941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56737720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56786898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57160689	0.89[AFR][1000 genomes]
rs58378663	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59099772	1.00[AFR][1000 genomes]
rs61125864	0.94[AFR][1000 genomes]
rs61319348	1.00[AMR][1000 genomes]
rs61702458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61739410	1.00[AMR][1000 genomes]
rs73369573	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73369575	1.00[AMR][1000 genomes]
rs73371522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73371528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73371544	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73371559	1.00[AMR][1000 genomes]
rs73371582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373667	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373668	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428473	chr6:15522653-15595739	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15534400-15609800	Weak transcription	Thymus	Thymus
2	chr6:15552400-15571800	Weak transcription	Fetal Intestine Small	intestine
3	chr6:15552400-15574200	Weak transcription	Primary T cells from cord blood	blood
4	chr6:15552400-15577400	Weak transcription	Lung	lung
5	chr6:15552400-15578200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:15554400-15577600	Weak transcription	Aorta	Aorta
7	chr6:15555000-15573200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:15556400-15571800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:15556800-15571400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:15557200-15577600	Weak transcription	Spleen	Spleen
11	chr6:15557400-15574400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:15561600-15578200	Weak transcription	Pancreas	Pancrea
13	chr6:15562000-15572800	Weak transcription	Primary B cells from peripheral blood	blood
14	chr6:15562200-15580400	Weak transcription	Fetal Thymus	thymus
15	chr6:15562200-15588800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:15562400-15574400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:15563400-15577600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:15563400-15577800	Weak transcription	Brain Anterior Caudate	brain
19	chr6:15563400-15604200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr6:15564000-15574400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:15564000-15586800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:15565400-15593200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr6:15565800-15595800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr6:15567200-15593800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:15569400-15570800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:15569600-15570600	Weak transcription	GM12878-XiMat	blood
27	chr6:15569800-15570800	Enhancers	H1 Cell Line	embryonic stem cell
28	chr6:15569800-15572400	Weak transcription	Placenta	Placenta
29	chr6:15570000-15573400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr6:15570000-15574200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr6:15570000-15574400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:15570000-15578000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr6:15570000-15578200	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr6:15570000-15581200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr6:15570200-15571800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:15570200-15573200	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr6:15570200-15574400	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr6:15570200-15575000	Weak transcription	Right Ventricle	heart
39	chr6:15570200-15581000	Weak transcription	Left Ventricle	heart
40	chr6:15570400-15570800	Genic enhancers	K562	blood
41	chr6:15570400-15571000	Enhancers	Dnd41	blood
42	chr6:15570400-15571800	Weak transcription	Primary B cells from cord blood	blood
43	chr6:15570400-15574400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr6:15570400-15578200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr6:15570400-15578200	Weak transcription	Rectal Smooth Muscle	rectum
46	chr6:15570400-15583400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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