Variant report

Variant	rs73371582
Chromosome Location	chr6:15616145-15616146
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15614240..15617962-chr6:15618192..15624237,8	K562	blood:
2	chr6:15610180..15611688-chr6:15615613..15618447,2	K562	blood:
3	chr6:15515058..15517945-chr6:15613848..15616307,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11961759	1.00[AMR][1000 genomes]
rs11962577	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11968596	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11969192	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2056941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56737720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56786898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57160689	0.89[AFR][1000 genomes]
rs58378663	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58620746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59099772	1.00[AFR][1000 genomes]
rs61125864	0.94[AFR][1000 genomes]
rs61319348	1.00[AMR][1000 genomes]
rs61702458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61739410	1.00[AMR][1000 genomes]
rs73369573	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73369575	1.00[AMR][1000 genomes]
rs73371522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73371528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73371544	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73371559	1.00[AMR][1000 genomes]
rs73373623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373667	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373668	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15587000-15616200	Weak transcription	Pancreas	Pancrea
2	chr6:15593800-15621800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr6:15594000-15616200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:15594000-15621800	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:15594000-15626600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr6:15596400-15616600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:15596400-15621000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:15596400-15621800	Weak transcription	Brain Angular Gyrus	brain
9	chr6:15596600-15621800	Weak transcription	Ovary	ovary
10	chr6:15596800-15621800	Weak transcription	Brain Anterior Caudate	brain
11	chr6:15597000-15621600	Weak transcription	Colon Smooth Muscle	Colon
12	chr6:15597000-15641600	Weak transcription	Spleen	Spleen
13	chr6:15597800-15618400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:15599600-15616200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:15600000-15660400	Weak transcription	Hela-S3	cervix
16	chr6:15601000-15621800	Weak transcription	Liver	Liver
17	chr6:15604800-15623600	Weak transcription	Right Ventricle	heart
18	chr6:15606800-15618600	Weak transcription	Brain Substantia Nigra	brain
19	chr6:15607200-15621400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:15607200-15621800	Weak transcription	Small Intestine	intestine
21	chr6:15607200-15623400	Weak transcription	Brain Germinal Matrix	brain
22	chr6:15607400-15622000	Weak transcription	Fetal Brain Male	brain
23	chr6:15607800-15616800	Strong transcription	Dnd41	blood
24	chr6:15608600-15616200	Weak transcription	Esophagus	oesophagus
25	chr6:15608600-15621800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr6:15608800-15621600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:15609000-15616200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:15609000-15621600	Weak transcription	NHLF	lung
29	chr6:15609000-15622000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr6:15609000-15622200	Weak transcription	NHDF-Ad	bronchial
31	chr6:15609000-15628200	Weak transcription	HSMM	muscle
32	chr6:15609200-15616200	Weak transcription	HMEC	breast
33	chr6:15609200-15621400	Weak transcription	Adipose Nuclei	Adipose
34	chr6:15609200-15621400	Weak transcription	NHEK	skin
35	chr6:15609600-15627400	Weak transcription	HUVEC	blood vessel
36	chr6:15609800-15616600	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr6:15609800-15617000	Strong transcription	Primary T cells from cord blood	blood
38	chr6:15610000-15620800	Weak transcription	Fetal Heart	heart
39	chr6:15610200-15616200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr6:15610400-15626000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr6:15610600-15640200	Weak transcription	Aorta	Aorta
42	chr6:15611600-15616200	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr6:15611600-15621600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr6:15611800-15621600	Weak transcription	Rectal Smooth Muscle	rectum
45	chr6:15611800-15641800	Weak transcription	Fetal Muscle Trunk	muscle
46	chr6:15612000-15621600	Weak transcription	HSMMtube	muscle
47	chr6:15612200-15616200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr6:15612200-15620600	Weak transcription	Fetal Brain Female	brain
49	chr6:15612400-15616200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr6:15612600-15621400	Weak transcription	Primary hematopoietic stem cells	blood

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