Variant report

Variant	rs6905116
Chromosome Location	chr6:15415254-15415255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15412621..15415523-chr6:15427766..15430879,3	K562	blood:
2	chr6:15409169..15411374-chr6:15414283..15416060,2	MCF-7	breast:
3	chr6:15408787..15411713-chr6:15413410..15416098,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10484354	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11961516	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11961748	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11961827	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11963285	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11964758	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11965505	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11969359	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16876316	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16876327	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16876361	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35438327	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35801290	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60535196	0.91[AFR][1000 genomes]
rs73365205	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73365221	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73365227	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73365229	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73365234	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73367315	1.00[AMR][1000 genomes]
rs7743283	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7748631	0.80[AFR][1000 genomes]
rs7757154	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7769123	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv949448	chr6:15279490-15449441	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1025512	chr6:15291551-15452395	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv538143	chr6:15291551-15452395	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv1019927	chr6:15351240-15419257	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv538145	chr6:15351240-15419257	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	esv3402665	chr6:15414573-15416971	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15401200-15417200	Weak transcription	Lung	lung
2	chr6:15401200-15426200	Weak transcription	Pancreas	Pancrea
3	chr6:15401600-15415800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:15403000-15422000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:15404600-15420800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:15404600-15421200	Weak transcription	Spleen	Spleen
7	chr6:15404800-15417800	Weak transcription	NH-A	brain
8	chr6:15404800-15427600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:15404800-15429000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:15405200-15418600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:15405400-15417000	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr6:15405600-15422000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:15405800-15421200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:15406600-15416400	Weak transcription	Thymus	Thymus
15	chr6:15406600-15417000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:15406600-15417000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:15406800-15416200	Weak transcription	Fetal Intestine Small	intestine
18	chr6:15409200-15426200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr6:15410600-15417000	Weak transcription	HepG2	liver
20	chr6:15410600-15422000	Weak transcription	Gastric	stomach
21	chr6:15410800-15415400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:15411800-15416600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr6:15412200-15421600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:15412400-15417000	Weak transcription	GM12878-XiMat	blood
25	chr6:15412400-15418000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr6:15412400-15418800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr6:15412600-15417000	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr6:15412600-15417400	Strong transcription	H1 Cell Line	embryonic stem cell
29	chr6:15412800-15418200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr6:15413000-15415400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr6:15413000-15417000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr6:15413000-15417200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:15413000-15418000	Weak transcription	Primary hematopoietic stem cells	blood
34	chr6:15413000-15420800	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr6:15413400-15415600	Enhancers	Right Atrium	heart
36	chr6:15413600-15418200	Weak transcription	Fetal Muscle Trunk	muscle
37	chr6:15413600-15421200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:15413800-15415600	Enhancers	Brain Anterior Caudate	brain
39	chr6:15414200-15416200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:15414200-15417000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:15414200-15417600	Weak transcription	Left Ventricle	heart
42	chr6:15414200-15421000	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr6:15414200-15421000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr6:15414200-15421200	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr6:15414200-15422000	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr6:15414200-15422000	Weak transcription	Right Ventricle	heart
47	chr6:15414200-15427200	Weak transcription	Rectal Smooth Muscle	rectum
48	chr6:15414200-15427400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr6:15414200-15429200	Weak transcription	HSMM	muscle
50	chr6:15414400-15415400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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