Variant report

Variant	rs35439222
Chromosome Location	chr4:159011350-159011351
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:158912447..158914519-chr4:159011128..159013827,2	MCF-7	breast:
2	chr4:159010029..159020346-chr4:159088735..159099117,18	MCF-7	breast:
3	chr4:159010781..159012395-chr4:159090900..159093537,2	MCF-7	breast:
4	chr4:159010502..159012661-chr4:159014631..159016735,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164125	Chromatin interaction
ENSG00000248429	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10022190	1.00[ASN][1000 genomes]
rs12511713	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13101806	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13105388	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13105599	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13119344	0.90[AMR][1000 genomes]
rs13123367	0.82[AMR][1000 genomes]
rs13128845	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13149552	1.00[ASN][1000 genomes]
rs17036867	0.86[AMR][1000 genomes]
rs17036927	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2346319	0.81[AMR][1000 genomes]
rs28717075	1.00[ASN][1000 genomes]
rs34009182	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34030902	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs34131483	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34387852	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34535065	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34735033	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs34765608	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35346320	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35465944	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35473373	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs35518318	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs36069561	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4569796	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs5004547	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62337011	0.82[AFR][1000 genomes]
rs6536292	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6846661	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71607171	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7437833	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7664258	1.00[ASN][1000 genomes]
rs7664738	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7665295	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7687980	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7691126	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993476	chr4:158550643-159202015	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1030124	chr4:158758675-159251140	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv881288	chr4:158891733-159028080	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1021067	chr4:158972282-159175475	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:159011000-159011400	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr4:159011000-159011800	Active TSS	Duodenum Mucosa	Duodenum
3	chr4:159011200-159011600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:159011200-159011800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:159011200-159011800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr4:159011200-159011800	Active TSS	Ovary	ovary

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