Variant report

Variant	rs4569796
Chromosome Location	chr4:158983480-158983481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:158983032..158986002-chr4:158989466..158992297,3	MCF-7	breast:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10022190	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10024133	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs11100150	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs11100151	1.00[CHB][hapmap]
rs11731973	1.00[JPT][hapmap]
rs11938464	1.00[CHB][hapmap]
rs12502811	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[TSI][hapmap]
rs12511679	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap]
rs12511713	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13101806	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13105388	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13105599	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13119344	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13123367	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13128845	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13149552	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1320370	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1320371	1.00[CHB][hapmap]
rs17036867	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17036927	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2346320	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap]
rs2346776	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap]
rs2346780	1.00[CHB][hapmap]
rs2346783	1.00[CHB][hapmap]
rs2346784	1.00[CHB][hapmap]
rs28717075	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34009182	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34030902	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34131483	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34387852	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34535065	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34735033	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34765608	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35346320	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35439222	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35465944	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35473373	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35518318	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36069561	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4389619	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4391084	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap]
rs4472184	1.00[CHB][hapmap]
rs4582199	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs4627913	1.00[CHB][hapmap]
rs4690893	1.00[CHB][hapmap];0.82[GIH][hapmap];1.00[TSI][hapmap]
rs4691456	1.00[CHB][hapmap]
rs4691457	1.00[CHB][hapmap]
rs4691458	1.00[CHB][hapmap]
rs4691462	1.00[CHB][hapmap]
rs4691463	1.00[CHB][hapmap]
rs4691464	1.00[CHB][hapmap]
rs4691465	1.00[CHB][hapmap]
rs4691467	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap]
rs5004547	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6536292	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6812635	1.00[CHB][hapmap]
rs6821598	1.00[CHB][hapmap]
rs6832099	1.00[CHB][hapmap]
rs6834164	1.00[CHB][hapmap]
rs6846661	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6849902	1.00[CHD][hapmap];1.00[TSI][hapmap]
rs6852646	1.00[CHB][hapmap]
rs6855420	1.00[CHB][hapmap]
rs71607171	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7437833	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7664258	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7664738	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7665295	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7671094	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7671501	1.00[CHB][hapmap]
rs7671934	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap]
rs7687980	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7691126	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7695599	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993476	chr4:158550643-159202015	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1030124	chr4:158758675-159251140	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv881288	chr4:158891733-159028080	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1021067	chr4:158972282-159175475	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:158978400-158985200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr4:158981400-158985800	Weak transcription	HUVEC	blood vessel

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