Variant report

Variant	rs7665295
Chromosome Location	chr4:158939985-158939986
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:158939868..158942702-chr4:158944562..158946607,2	MCF-7	breast:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10018872	1.00[CEU][hapmap]
rs10022190	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10024133	1.00[CEU][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs10517689	1.00[CEU][hapmap]
rs11100150	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs11100151	1.00[CEU][hapmap]
rs11731973	1.00[JPT][hapmap]
rs11938464	1.00[CEU][hapmap]
rs12502811	1.00[CEU][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[TSI][hapmap]
rs12511679	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap]
rs12511713	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13101806	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13105388	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13105599	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13119344	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13123367	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13128845	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13149552	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1320370	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1320371	1.00[CEU][hapmap]
rs17036867	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17036927	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2346320	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap]
rs2346381	1.00[CEU][hapmap]
rs2346776	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap]
rs2346780	1.00[CEU][hapmap]
rs2346783	1.00[CEU][hapmap]
rs28717075	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34009182	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34030902	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34131483	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34387852	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34535065	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34735033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34765608	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35346320	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35439222	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35465944	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35473373	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35518318	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36069561	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4389619	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4391084	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap]
rs4472184	1.00[CEU][hapmap]
rs4569796	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4582199	1.00[CEU][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs4627913	1.00[CEU][hapmap]
rs4690893	1.00[CEU][hapmap];0.82[GIH][hapmap];1.00[TSI][hapmap]
rs4691456	1.00[CEU][hapmap]
rs4691457	1.00[CEU][hapmap]
rs4691458	1.00[CEU][hapmap]
rs4691462	1.00[CEU][hapmap]
rs4691463	1.00[CEU][hapmap]
rs4691464	1.00[CEU][hapmap]
rs4691465	1.00[CEU][hapmap]
rs4691467	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap]
rs5004547	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6536292	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6812635	1.00[CEU][hapmap]
rs6821598	1.00[CEU][hapmap]
rs6832099	1.00[CEU][hapmap]
rs6846661	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6849902	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap]
rs6852646	1.00[CEU][hapmap]
rs6855420	1.00[CEU][hapmap]
rs71607171	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7437833	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7664258	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7664738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7671094	1.00[CEU][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7671501	1.00[CEU][hapmap]
rs7671934	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap]
rs7687980	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7691126	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7695599	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993476	chr4:158550643-159202015	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1030124	chr4:158758675-159251140	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv881288	chr4:158891733-159028080	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:158930200-158940800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr4:158930400-158940800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:158930600-158940800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:158930800-158941400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:158932600-158941400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr4:158934200-158941400	Enhancers	HUVEC	blood vessel
7	chr4:158934600-158943800	Enhancers	NHDF-Ad	bronchial
8	chr4:158936000-158941600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr4:158936200-158942600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:158936600-158941200	Weak transcription	NHEK	skin
11	chr4:158936800-158940800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr4:158936800-158941400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:158937200-158947000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:158937200-158947200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:158938000-158940800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr4:158938000-158941400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr4:158938000-158941400	Weak transcription	Adipose Nuclei	Adipose
18	chr4:158938000-158941400	Weak transcription	Brain Substantia Nigra	brain
19	chr4:158938200-158940800	Weak transcription	A549	lung
20	chr4:158938200-158940800	Weak transcription	HMEC	breast
21	chr4:158938800-158942800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:158938800-158942800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:158939200-158940000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr4:158939200-158940200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr4:158939200-158942200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr4:158939200-158942800	Enhancers	HSMM	muscle
27	chr4:158939400-158941200	Enhancers	HepG2	liver
28	chr4:158939400-158942800	Enhancers	NH-A	brain
29	chr4:158939400-158943000	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr4:158939400-158943400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr4:158939400-158943600	Enhancers	Osteobl	bone
32	chr4:158939400-158943800	Enhancers	HSMMtube	muscle
33	chr4:158939600-158940200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr4:158939600-158940800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr4:158939800-158940000	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr4:158939800-158940000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr4:158939800-158940800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr4:158939800-158940800	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr4:158939800-158941000	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr4:158939800-158941000	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr4:158939800-158941200	Weak transcription	NHLF	lung
42	chr4:158939800-158941400	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr4:158939800-158943600	Enhancers	Colon Smooth Muscle	Colon
44	chr4:158939800-158955200	Weak transcription	Ovary	ovary

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